halophFGD

Basic Information

Locus ID: BniB05g005280.2N

Species & Taxonomic ID: Brassica nigra & 3710

Genome Assembly: N100

Description: F-box associated

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
B5	2754045	2755357	-	BniB05g005280.2N

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.12	44,107.01 Da	36.63	82.78	-0.28

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF07734	F-box associated	138	304	4.5E-27	IPR006527
TIGRFAM	TIGR01640	F_box_assoc_1: F-box protein interaction domain	43	275	1.5E-37	IPR017451
MobiDBLite	mobidb-lite	consensus disorder prediction	345	366	-	-

Best hit

Source	Best Hit ID	Description	E-value
TAIR	AT1G12170.1	F-box family protein.	0
RefSeq	XP_033135667.1	F-box protein At3g17710-like isoform X2 [Brassica rapa]	0
Swiss-Prot	Q9FWW7	Putative F-box/kelch-repeat protein At1g12170 OS=Arabidopsis thaliana OX=3702 GN=At1g12170 PE=4 SV=2	0
TrEMBL	A0A8X7PFV9	Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_089540 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Brassicaceae	Arabidopsis thaliana	22	AT1G12170.1, AT1G12190.1, AT1G32430.1, AT1G47390.1 ... AT1G51290.1, AT1G51320.1, AT1G53325.1, AT1G58090.1, AT1G59630.1, AT2G07120.1, AT2G14710.1, AT2G17310.1, AT3G16555.1, AT3G16580.1, AT3G16590.1, AT3G17710.1, AT3G18340.1, AT3G44130.1, AT3G51171.1, AT3G59590.1, AT3G59610.1, AT5G37040.1
Brassicaceae	Eutrema salsugineum	17	Thhalv10002898m.g.v1.0, Thhalv10006465m.g.v1.0 ... Thhalv10009548m.g.v1.0, Thhalv10009774m.g.v1.0, Thhalv10015389m.g.v1.0, Thhalv10017596m.g.v1.0, Thhalv10017976m.g.v1.0, Thhalv10019557m.g.v1.0, Thhalv10019738m.g.v1.0, Thhalv10019791m.g.v1.0, Thhalv10021923m.g.v1.0, Thhalv10022086m.g.v1.0, Thhalv10022098m.g.v1.0, Thhalv10022412m.g.v1.0, Thhalv10023851m.g.v1.0, Thhalv10024017m.g.v1.0, Thhalv10024060m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp1g27690.v2.2, Sp5g16370.v2.2
Brassicaceae	Brassica nigra	23	BniB01g008560.2N, BniB01g010040.2N, BniB01g047060.2N ... BniB01g047200.2N, BniB01g048040.2N, BniB01g048050.2N, BniB01g048060.2N, BniB01g054460.2N, BniB02g084110.2N, BniB04g047920.2N, BniB04g047930.2N, BniB04g048010.2N, BniB05g005280.2N, BniB07g029660.2N, BniB07g029670.2N, BniB07g048410.2N, BniB07g052250.2N, BniB07g052480.2N, BniB07g052490.2N, BniB07g052500.2N, BniB08g022560.2N, BniB08g022580.2N, BniB08g022590.2N