Basic Information
Locus ID:
BniB05g005180.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
poly(a) polymerase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B5 | 2698550 | 2702747 | - | BniB05g005180.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.05 | 85,916.74 Da | 51.02 | 75.72 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05402 | NT_PAP_TUTase | 60 | 215 | 4.19552E-31 | - |
| Pfam | PF01909 | Nucleotidyltransferase domain | 94 | 169 | 2.2E-8 | IPR002934 |
| Pfam | PF04928 | Poly(A) polymerase central domain | 21 | 365 | 1.3E-107 | IPR007012 |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 368 | 426 | 2.0E-11 | IPR007010 |
| SUPERFAMILY | SSF81631 | PAP/OAS1 substrate-binding domain | 216 | 364 | 4.19E-64 | - |
| SUPERFAMILY | SSF81301 | Nucleotidyltransferase | 17 | 214 | 2.71E-54 | IPR043519 |
| SUPERFAMILY | SSF55003 | PAP/Archaeal CCA-adding enzyme, C-terminal domain | 367 | 493 | 1.12E-36 | IPR011068 |
| Gene3D | G3DSA:3.30.70.590 | Poly(A) polymerase predicted RNA binding domain | 367 | 483 | 3.0E-26 | - |
| Gene3D | G3DSA:3.30.460.10 | Beta Polymerase, domain 2 | 53 | 209 | 1.5E-156 | IPR043519 |
| Gene3D | G3DSA:1.10.1410.10 | - | 21 | 363 | 1.5E-156 | - |
| PIRSF | PIRSF018425 | PolyA_polymerase | 11 | 657 | 1.7E-232 | IPR014492 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 526 | 552 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 499 | 557 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 722 | 760 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 501 | 525 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G32850.1 | nuclear poly(a) polymerase. Encodes a nuclear poly(A) polymerase. Located in the nucleus. | 0 |
| RefSeq | XP_018470846.1 | PREDICTED: nuclear poly(A) polymerase 4 isoform X2 [Raphanus sativus] | 0 |
| Q8VYW1 | Nuclear poly(A) polymerase 4 OS=Arabidopsis thaliana OX=3702 GN=PAPS4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6J0MH35 | Poly(A) polymerase OS=Raphanus sativus OX=3726 GN=LOC108842434 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology