Basic Information
Locus ID:
BniB05g004790.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Cell division cycle 20.2, cofactor of APC complex-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B5 | 2510457 | 2514609 | + | BniB05g004790.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.18 | 76,907.68 Da | 44.14 | 79.43 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 162 | 432 | 2.57053E-45 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 261 | 296 | 4.6E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 397 | 432 | 0.0023 | IPR001680 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 179 | 237 | 5.2E-7 | IPR024977 |
| Pfam | PF10075 | CSN8/PSMD8/EIF3K family | 525 | 656 | 3.4E-19 | IPR033464 |
| Pfam | PF00400 | WD domain, G-beta repeat | 309 | 347 | 5.7E-4 | IPR001680 |
| SUPERFAMILY | SSF48371 | ARM repeat | 468 | 593 | 5.75E-43 | IPR016024 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 142 | 434 | 2.51E-61 | IPR011047 |
| SUPERFAMILY | SSF46785 | Winged helix DNA-binding domain | 596 | 686 | 4.9E-16 | IPR036390 |
| Gene3D | G3DSA:1.10.10.10 | - | 587 | 687 | 3.0E-19 | IPR036388 |
| Gene3D | G3DSA:1.25.40.250 | ARM repeat; domain 1 | 468 | 584 | 2.3E-41 | IPR016020 |
| Gene3D | G3DSA:2.130.10.10 | - | 87 | 435 | 1.1E-126 | IPR015943 |
| SMART | SM00320 | WD40_4 | 173 | 212 | 9.7E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 215 | 253 | 0.52 | IPR001680 |
| SMART | SM00320 | WD40_4 | 350 | 390 | 220.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 305 | 347 | 4.6E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 257 | 296 | 1.3E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 393 | 432 | 5.0E-6 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 180 | 221 | 11.778342 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 312 | 356 | 8.536777 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 264 | 296 | 11.787407 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 180 | 212 | 8.755605 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 400 | 433 | 12.580379 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 264 | 305 | 14.318126 | IPR001680 |
| ProSiteProfiles | PS50250 | PCI domain profile. | 506 | 664 | 12.423586 | IPR000717 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 400 | 433 | 10.469233 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 419 | 433 | - | IPR019775 |
| Hamap | MF_03010 | Eukaryotic translation initiation factor 3 subunit K [EIF3K]. | 467 | 689 | 24.660652 | IPR009374 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33270.1 | Transducin family protein / WD-40 repeat family protein. putative cdc20 protein (CDC20.1) | 0 |
| RefSeq | NP_001303176.1 | cell division cycle 20.1, cofactor of APC complex [Brassica napus] | 0 |
| Q9SZA4 | Cell division cycle 20.1, cofactor of APC complex OS=Arabidopsis thaliana OX=3702 GN=CDC20-1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A816R214 | Eukaryotic translation initiation factor 3 subunit K OS=Brassica napus OX=3708 GN=DARMORV10_C01P05390.1 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology