halophFGD

Basic Information

Locus ID: BniB05g004570.2N

Species & Taxonomic ID: Brassica nigra & 3710

Genome Assembly: N100

Description: Phospho-2-dehydro-3-deoxyheptonate aldolase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
B5	2434809	2437115	-	BniB05g004570.2N

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.19	57,109.31 Da	44.61	75.09	-0.39

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF01474	Class-II DAHP synthetase family	57	493	4.5E-195	IPR002480
SUPERFAMILY	SSF51569	Aldolase	46	497	8.06E-199	-
Gene3D	G3DSA:3.20.20.70	Aldolase class I	90	498	1.8E-156	IPR013785
TIGRFAM	TIGR01358	DAHP_synth_II: 3-deoxy-7-phosphoheptulonate synthase	57	500	1.4E-234	IPR002480
MobiDBLite	mobidb-lite	consensus disorder prediction	1	15	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	56	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	42	56	-	-

Gene Ontology

Biological Process:

GO:0009073 (aromatic amino acid family biosynthetic process)

Molecular Function:

GO:0003824 (catalytic activity) GO:0003849 (3-deoxy-7-phosphoheptulonate synthase activity)

KEGG Pathway

KO Term:

K01626 (3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54])

Pathway:

ko00400 (Phenylalanine, tyrosine and tryptophan biosynthesis) map00400 (Phenylalanine, tyrosine and tryptophan biosynthesis) ko01100 (Metabolic pathways) map01100 (Metabolic pathways) ko01110 (Biosynthesis of secondary metabolites) map01110 (Biosynthesis of secondary metabolites) ko01230 (Biosynthesis of amino acids) map01230 (Biosynthesis of amino acids) ko02024 (Quorum sensing) map02024 (Quorum sensing)

Module:

M00022 (Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate)

Reaction:

R01826 (Phosphoenolpyruvate + D-Erythrose 4-phosphate + H2O <=> 2-Dehydro-3-deoxy-D-arabino-heptonate 7-phosphate + Orthophosphate)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G33510.1	3-deoxy-d-arabino-heptulosonate 7-phosphate synthase. Enzyme catalyzing the first committed step in aromatic amino acid biosynthesis
RefSeq	XP_013606488.1	PREDICTED: phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic [Brassica oleracea var. oleracea]
Swiss-Prot	Q00218	Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DHS2 PE=2 SV=2
TrEMBL	A0A0D3A280	Phospho-2-dehydro-3-deoxyheptonate aldolase OS=Brassica oleracea var. oleracea OX=109376 GN=106313263 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg20085, jg22645, jg26342, jg31107
Aizoaceae	Mesembryanthemum crystallinum	2	gene_21814, gene_23335
Amaranthaceae	Atriplex hortensis	2	Ah009818, Ah023832
Amaranthaceae	Beta vulgaris	2	BVRB_1g008670, BVRB_9g215440
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg11250, Sbi_jg29355, Sbi_jg3582, Sbi_jg46220
Amaranthaceae	Salicornia europaea	3	Seu_jg20551, Seu_jg20554, Seu_jg6372
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00000841, GOSA_00005414
Amaranthaceae	Suaeda glauca	5	Sgl11809, Sgl11970, Sgl17299, Sgl56311, Sgl61819
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000013634, gene:ENSEOMG00000018766 ... gene:ENSEOMG00000033162, gene:ENSEOMG00000038396, gene:ENSEOMG00000049603, gene:ENSEOMG00000052125
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.1AG0011520, CQ.Regalona.r1.1BG0014440 ... CQ.Regalona.r1.7BG0004180, CQ.Regalona.r1.9AG0020470
Anacardiaceae	Pistacia vera	3	pistato.v30041210, pistato.v30101690, pistato.v30203280
Apiaceae	Apium graveolens	3	Ag2G00587, Ag3G01011, Ag3G01685
Arecaceae	Cocos nucifera	5	COCNU_02G007240, COCNU_05G005580, COCNU_13G003270 ... contig69148513G000010, scaffold001962G000050
Arecaceae	Phoenix dactylifera	7	gene-LOC103697540, gene-LOC103701771, gene-LOC103707951 ... gene-LOC103710778, gene-LOC103717958, gene-LOC120104018, gene-LOC120105219
Asparagaceae	Asparagus officinalis	3	AsparagusV1_03.1847.V1.1, AsparagusV1_03.288.V1.1 ... AsparagusV1_07.2738.V1.1
Asteraceae	Flaveria trinervia	5	Ftri10G07796, Ftri16G23259, Ftri2G05729, Ftri8G19921 ... Ftri9G17569
Brassicaceae	Arabidopsis thaliana	3	AT1G22410.1, AT4G33510.1, AT4G39980.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10007380m.g.v1.0, Thhalv10024923m.g.v1.0 ... Thhalv10024959m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp1g19890.v2.2, Sp7g31250.v2.2, Sp7g35890.v2.2
Brassicaceae	Brassica nigra	5	BniB03g019840.2N, BniB03g057640.2N, BniB04g037510.2N ... BniB05g000100.2N, BniB05g004570.2N
Casuarinaceae	Casuarina equisetifolia	8	Ceq01G0539, Ceq03G1318, Ceq06G1954, Ceq08G1206, Ceq08G1215 ... Ceq08G1216, Ceq09G0634, Ceq09G0642
Casuarinaceae	Casuarina glauca	6	Cgl01G0628, Cgl03G1420, Cgl06G2047, Cgl06G2062, Cgl09G0679 ... Cgl09G0691
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno02g02590, gene.Cymno09g04480
Dunaliellaceae	Dunaliella salina	1	Dusal.0249s00002.v1.0
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate01g24320, gene.Thate03g06120, gene.Thate05g27460
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-2094
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG02.2496, evm.TU.LG06.1082, evm.TU.LG08.1252
Plantaginaceae	Plantago ovata	4	Pov_00002117, Pov_00020984, Pov_00037229, Pov_00039775
Plumbaginaceae	Limonium bicolor	5	Lb1G05897, Lb1G05898, Lb1G05916, Lb2G15382, Lb3G18169
Poaceae	Echinochloa crus-galli	11	AH01.2865, AH01.3425, AH03.3743, AH08.1869, BH01.3211 ... BH01.3779, BH03.4020, CH01.3442, CH01.4029, CH03.4291, CH08.2142
Poaceae	Eleusine coracana subsp. coracana	7	gene-QOZ80_2AG0117050, gene-QOZ80_2BG0170730 ... gene-QOZ80_3AG0250750, gene-QOZ80_3BG0277450, gene-QOZ80_7AG0577730, gene-QOZ80_7BG0609060, gene-QOZ80_8AG0635000
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.1HG0057520.1, HORVU.MOREX.r3.2HG0123880.1
Poaceae	Lolium multiflorum	5	gene-QYE76_031027, gene-QYE76_031035, gene-QYE76_037262 ... gene-QYE76_039504, gene-QYE76_067520
Poaceae	Oryza coarctata	8	Oco05G015030, Oco06G015460, Oco13G013030, Oco14G013740 ... Oco15G012300, Oco16G010290, Oco19G010450, Oco20G010260
Poaceae	Oryza sativa	4	LOC_Os03g27230.1, LOC_Os07g42960.1, LOC_Os08g37790.1 ... LOC_Os10g41480.1
Poaceae	Paspalum vaginatum	4	gene-BS78_01G282500, gene-BS78_01G332500 ... gene-BS78_02G354700, gene-BS78_07G170600
Poaceae	Puccinellia tenuiflora	1	Pt_Chr0403297
Poaceae	Sporobolus alterniflorus	12	Chr01G025080, Chr04G012710, Chr07G012110, Chr16G016190 ... Chr17G015530, Chr19G001990, Chr19G002000, Chr24G015000, Chr27G015230, Chr27G016910, Chr28G011980, Chr29G003460
Poaceae	Thinopyrum elongatum	3	Tel1E01G367700, Tel2E01G323100, Telscf30201G000100
Poaceae	Triticum dicoccoides	4	gene_TRIDC1AG032620, gene_TRIDC1BG038000 ... gene_TRIDC2AG020680, gene_TRIDC2BG024570
Poaceae	Triticum aestivum	6	TraesCS1B02G229700.1, TraesCS1D02G218300.1 ... TraesCS2A02G163600.1, TraesCS2B02G189300.1, TraesCS2D02G170400.1, TraesCS7A02G412900.1
Poaceae	Zea mays	6	Zm00001eb018960_P001, Zm00001eb040990_P002 ... Zm00001eb109620_P001, Zm00001eb199100_P001, Zm00001eb218070_P001, Zm00001eb327800_P001
Poaceae	Zoysia japonica	4	nbis-gene-17281, nbis-gene-32982, nbis-gene-338 ... nbis-gene-52195
Poaceae	Zoysia macrostachya	4	Zma_g24270, Zma_g3512, Zma_g5579, Zma_g6880
Portulacaceae	Portulaca oleracea	4	evm.TU.LG02.1944, evm.TU.LG04.1813, evm.TU.LG06.557 ... evm.TU.LG09.14
Posidoniaceae	Posidonia oceanica	3	gene.Posoc02g18570, gene.Posoc02g29610, gene.Posoc04g16070
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_14_RagTag.434, evm.TU.Scaffold_7_RagTag.979 ... evm.TU.Scaffold_8_RagTag.760
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-17495, nbisL1-mrna-17922, nbisL1-mrna-18985
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-10874, nbisL1-mrna-18028, nbisL1-mrna-3849
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-20488, nbisL1-mrna-6809, nbisL1-mrna-8301
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000002l.745, evm.TU.utg000007l.115 ... evm.TU.utg000018l.512
Rhizophoraceae	Kandelia obovata	1	Maker00003704
Rhizophoraceae	Rhizophora apiculata	5	nbisL1-mrna-13683, nbisL1-mrna-13684, nbisL1-mrna-16190 ... nbisL1-mrna-2994, nbisL1-mrna-8225
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-10664, nbisL1-mrna-20306, nbisL1-mrna-9967
Salicaceae	Populus euphratica	6	populus_peu03076, populus_peu13750, populus_peu14588 ... populus_peu22907, populus_peu32244, populus_peu37139
Solanaceae	Lycium barbarum	3	gene-LOC132598806, gene-LOC132625731, gene-LOC132627551
Solanaceae	Solanum chilense	3	SOLCI000122500, SOLCI003723600, SOLCI006159500
Solanaceae	Solanum pennellii	3	gene-LOC107004500, gene-LOC107008091, gene-LOC107017083
Tamaricaceae	Reaumuria soongarica	4	STRG.12929_chr02_-, STRG.16578_chr06_-, STRG.9052_chr03_- ... gene_1282
Tamaricaceae	Tamarix chinensis	4	TC03G1603, TC09G0046, TC10G0032, TC11G0800
Zosteraceae	Zostera marina	3	Zosma01g03130.v3.1, Zosma01g09120.v3.1, Zosma06g16950.v3.1