Basic Information
Locus ID:
BniB05g001980.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Protein DA1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B5 | 1138128 | 1140605 | + | BniB05g001980.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.03 | 64,609.82 Da | 66.86 | 70.58 | -0.70 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09396 | LIM_DA1 | 199 | 251 | 3.9261E-28 | - |
| Pfam | PF00412 | LIM domain | 199 | 254 | 6.9E-8 | IPR001781 |
| Pfam | PF12315 | Protein DA1 | 348 | 563 | 3.2E-104 | IPR022087 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 226 | 279 | 1.96E-6 | - |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 194 | 224 | 8.57E-7 | - |
| Gene3D | G3DSA:2.10.110.10 | Cysteine Rich Protein | 194 | 258 | 1.3E-12 | - |
| SMART | SM00132 | lim_4 | 198 | 250 | 3.4E-11 | IPR001781 |
| SMART | SM00726 | uim | 159 | 178 | 1.5 | IPR003903 |
| SMART | SM00726 | uim | 43 | 62 | 2.1 | IPR003903 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 43 | 62 | 8.662196 | IPR003903 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 159 | 172 | 9.095433 | IPR003903 |
| ProSiteProfiles | PS50023 | LIM domain profile. | 197 | 257 | 11.2663 | IPR001781 |
| ProSitePatterns | PS00478 | LIM zinc-binding domain signature. | 199 | 233 | - | IPR001781 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 78 | 105 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 60 | 77 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 44 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 106 | 122 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 19 | 44 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 56 | 122 | - | - |
| Coils | Coil | Coil | 87 | 171 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G36860.1 | LIM domain-containing protein. | 0 |
| RefSeq | XP_018511219.1 | protein DA1-related 1 [Brassica rapa] | 0 |
| Q8W4F0 | Protein DA1-related 1 OS=Arabidopsis thaliana OX=3702 GN=DAR1 PE=1 SV=3 | 0 | |
| TrEMBL | M4D5F5 | LIM zinc-binding domain-containing protein OS=Brassica rapa subsp. pekinensis OX=51351 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology