Basic Information
Locus ID:
BniB05g001480.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
sphingolipid transporter activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B5 | 824953 | 826780 | + | BniB05g001480.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.67 | 62,795.83 Da | 45.23 | 81.95 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 51 | 88 | 2.5E-4 | IPR001810 |
| Pfam | PF08268 | F-box associated domain | 244 | 374 | 2.7E-28 | IPR013187 |
| SUPERFAMILY | SSF81383 | F-box domain | 44 | 117 | 4.45E-11 | IPR036047 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 150 | 388 | 8.7E-37 | IPR017451 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 37 | - | - |
| Coils | Coil | Coil | 521 | 544 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G30790.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_022550228.1 | F-box protein At1g30790-like [Brassica napus] | 0 |
| Q9SY20 | F-box protein At1g30790 OS=Arabidopsis thaliana OX=3702 GN=At1g30790 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8X7P1F0 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_094826 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G30790.1, AT1G32660.1 |
| Brassicaceae | Eutrema salsugineum | 8 | Thhalv10002533m.g.v1.0, Thhalv10007869m.g.v1.0 ... |
| Brassicaceae | Brassica nigra | 7 | BniB03g034380.2N, BniB03g069480.2N, BniB05g000090.2N ... |
| Plantaginaceae | Plantago ovata | 1 | Pov_00008690 |