Basic Information
Locus ID:
BniB05g001110.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Rhamnogalacturonate lyase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B5 | 561132 | 570266 | + | BniB05g001110.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.38 | 147,012.34 Da | 33.18 | 74.12 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10316 | RGL4_M | 980 | 1072 | 1.21632E-34 | IPR029413 |
| CDD | cd10317 | RGL4_C | 465 | 644 | 1.22844E-45 | - |
| CDD | cd10317 | RGL4_C | 1087 | 1273 | 2.06747E-52 | - |
| CDD | cd10316 | RGL4_M | 358 | 450 | 2.83125E-34 | IPR029413 |
| CDD | cd10320 | RGL4_N | 664 | 945 | 6.16005E-69 | - |
| CDD | cd10320 | RGL4_N | 42 | 323 | 1.19073E-69 | - |
| Pfam | PF06045 | Rhamnogalacturonate lyase family | 654 | 848 | 1.9E-79 | IPR010325 |
| Pfam | PF14683 | Polysaccharide lyase family 4, domain III | 1085 | 1272 | 1.4E-52 | IPR029411 |
| Pfam | PF14686 | Polysaccharide lyase family 4, domain II | 377 | 449 | 6.8E-25 | IPR029413 |
| Pfam | PF06045 | Rhamnogalacturonate lyase family | 32 | 226 | 9.7E-80 | IPR010325 |
| Pfam | PF14686 | Polysaccharide lyase family 4, domain II | 999 | 1071 | 2.9E-25 | IPR029413 |
| Pfam | PF14683 | Polysaccharide lyase family 4, domain III | 463 | 644 | 2.0E-48 | IPR029411 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 667 | 945 | 9.84E-9 | IPR011013 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 45 | 323 | 3.37E-9 | IPR011013 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 1083 | 1273 | 3.74E-47 | IPR008979 |
| SUPERFAMILY | SSF49452 | Starch-binding domain-like | 356 | 453 | 3.53E-12 | IPR013784 |
| SUPERFAMILY | SSF49452 | Starch-binding domain-like | 978 | 1075 | 2.16E-12 | IPR013784 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 460 | 644 | 6.12E-43 | IPR008979 |
| Gene3D | G3DSA:2.60.120.260 | - | 1083 | 1273 | 2.8E-15 | - |
| Gene3D | G3DSA:2.60.120.260 | - | 461 | 649 | 1.3E-14 | - |
| Gene3D | G3DSA:2.60.40.1120 | - | 355 | 451 | 1.3E-10 | - |
| Gene3D | G3DSA:2.60.40.1120 | - | 977 | 1073 | 5.5E-11 | - |
| Gene3D | G3DSA:2.70.98.10 | - | 658 | 955 | 1.1E-17 | IPR014718 |
| Gene3D | G3DSA:2.70.98.10 | - | 36 | 333 | 2.8E-17 | IPR014718 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38030.1 | Rhamnogalacturonate lyase family protein. | 0 |
| RefSeq | XP_011016984.1 | PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105120478 [Populus euphratica] | 0 |
| TrEMBL | A0A8X7P1X6 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_095120 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology