halophFGD

Basic Information

Locus ID: BniB05g000870.2N

Species & Taxonomic ID: Brassica nigra & 3710

Genome Assembly: N100

Description: Belongs to the FPP GGPP synthase family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
B5	469503	470572	-	BniB05g000870.2N

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.31	35,245.28 Da	38.11	86.68	-0.01

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00685	Trans_IPPS_HT	67	316	3.3706E-55	IPR000092
Pfam	PF00348	Polyprenyl synthetase	68	265	4.7E-31	IPR000092
SUPERFAMILY	SSF48576	Terpenoid synthases	42	296	5.14E-60	IPR008949
Gene3D	G3DSA:1.10.600.10	Farnesyl Diphosphate Synthase	37	321	2.9E-79	IPR008949
ProSitePatterns	PS00444	Polyprenyl synthases signature 2.	246	258	-	IPR033749
ProSitePatterns	PS00723	Polyprenyl synthases signature 1.	117	133	-	IPR033749
SFLD	SFLDS00005	Isoprenoid Synthase Type I	68	300	2.6E-39	-

Gene Ontology

Biological Process:

GO:0008299 (isoprenoid biosynthetic process)

KEGG Pathway

KO Term:

K13789 (geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29])

Pathway:

ko00900 (Terpenoid backbone biosynthesis) map00900 (Terpenoid backbone biosynthesis) ko01100 (Metabolic pathways) map01100 (Metabolic pathways) ko01110 (Biosynthesis of secondary metabolites) map01110 (Biosynthesis of secondary metabolites)

Module:

M00364 (C10-C20 isoprenoid biosynthesis, bacteria) M00366 (C10-C20 isoprenoid biosynthesis, plants)

Reaction:

R01658 (Dimethylallyl diphosphate + Isopentenyl diphosphate <=> Diphosphate + Geranyl diphosphate) R02003 (Geranyl diphosphate + Isopentenyl diphosphate <=> Diphosphate + trans,trans-Farnesyl diphosphate) R02061 (trans,trans-Farnesyl diphosphate + Isopentenyl diphosphate <=> Diphosphate + Geranylgeranyl diphosphate)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G38460.1	geranylgeranyl reductase.
RefSeq	XP_013609863.1	PREDICTED: heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic [Brassica oleracea var. oleracea]
Swiss-Prot	Q39108	Heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=GGR PE=1 SV=2
TrEMBL	A0A8X7P592	Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_093971 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	10	jg11914, jg19549, jg19553, jg20025, jg22837, jg26122, jg853 ... jg32446, jg39790, jg40930
Aizoaceae	Mesembryanthemum crystallinum	1	gene_24215
Amaranthaceae	Atriplex hortensis	4	Ah009610, Ah026594, Ah026595, Ah026596
Amaranthaceae	Beta vulgaris	2	BVRB_6g137830, BVRB_9g213360
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg12291, Sbi_jg14763, Sbi_jg30193, Sbi_jg43625 ... Sbi_jg47274, Sbi_jg55543
Amaranthaceae	Salicornia europaea	3	Seu_jg18286, Seu_jg21542, Seu_jg26099
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00013447, GOSA_00018841
Amaranthaceae	Suaeda glauca	5	Sgl34717, Sgl34720, Sgl40121, Sgl55520, Sgl60739
Amaranthaceae	Chenopodium album	5	gene:ENSEOMG00000003101, gene:ENSEOMG00000019252 ... gene:ENSEOMG00000028682, gene:ENSEOMG00000039116, gene:ENSEOMG00000052546
Amaranthaceae	Chenopodium quinoa	6	CQ.Regalona.r1.6AG0018070, CQ.Regalona.r1.6AG0018090 ... CQ.Regalona.r1.6BG0019150, CQ.Regalona.r1.6BG0019160, CQ.Regalona.r1.7BG0002390, CQ.Regalona.r1.9AG0022280
Anacardiaceae	Pistacia vera	4	pistato.v30090160, pistato.v30107340, pistato.v30151070 ... pistato.v30277590
Apiaceae	Apium graveolens	6	Ag3G00180, Ag4G00505, Ag6G00171, Ag6G02392, AgUnG00220 ... AgUnG00444
Arecaceae	Cocos nucifera	8	COCNU_01G014910, COCNU_03G010250, COCNU_10G007410 ... COCNU_10G009310, COCNU_13G007380, COCNU_14G010140, contig69249246G000010, scaffold001111G000020
Arecaceae	Phoenix dactylifera	4	gene-LOC103698354, gene-LOC103704346, gene-LOC103723798 ... gene-LOC120107786
Asparagaceae	Asparagus officinalis	1	AsparagusV1_08.1190.V1.1
Asteraceae	Flaveria trinervia	4	Ftri13G03931, Ftri13G24597, Ftri2G09115, Ftri4G14322
Brassicaceae	Arabidopsis thaliana	12	AT1G49530.1, AT2G18620.1, AT2G18640.1, AT2G23800.1 ... AT3G14510.1, AT3G14530.1, AT3G14550.1, AT3G20160.1, AT3G29430.1, AT3G32040.1, AT4G36810.1, AT4G38460.1
Brassicaceae	Eutrema salsugineum	9	Thhalv10000201m.g.v1.0, Thhalv10021022m.g.v1.0 ... Thhalv10022044m.g.v1.0, Thhalv10022207m.g.v1.0, Thhalv10022318m.g.v1.0, Thhalv10022745m.g.v1.0, Thhalv10022750m.g.v1.0, Thhalv10025481m.g.v1.0, Thhalv10025662m.g.v1.0
Brassicaceae	Schrenkiella parvula	9	Sp1g36400.v2.2, Sp3g12820.v2.2, Sp3g18170.v2.2 ... Sp3g18180.v2.2, Sp3g18190.v2.2, Sp3g32110.v2.2, Sp4g02740.v2.2, Sp7g34470.v2.2, Sp7g37320.v2.2
Brassicaceae	Brassica nigra	14	BniB01g019850.2N, BniB01g043750.2N, BniB01g050520.2N ... BniB02g021140.2N, BniB03g014000.2N, BniB03g067420.2N, BniB04g025490.2N, BniB05g000870.2N, BniB05g002010.2N, BniB07g031130.2N, BniB07g031140.2N, BniB07g031180.2N, BniB07g031190.2N, BniB07g050710.2N
Casuarinaceae	Casuarina equisetifolia	4	Ceq05G0729, Ceq07G1778, Ceq08G0350, Ceq08G0642
Casuarinaceae	Casuarina glauca	4	Cgl05G0738, Cgl07G1925, Cgl08G0305, Cgl08G0614
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno03g07210, gene.Cymno09g06790, gene.Cymno09g06830
Dunaliellaceae	Dunaliella salina	1	Dusal.0152s00015.v1.0
Hydrocharitaceae	Thalassia testudinum	7	gene.Thate01g33690, gene.Thate02g04310, gene.Thate02g25930 ... gene.Thate02g37860, gene.Thate04g06540, gene.Thate05g11580, gene.Thate06g19700
Nitrariaceae	Nitraria sibirica	5	evm.TU.LG02.2274, evm.TU.LG02.593, evm.TU.LG02.594 ... evm.TU.LG02.595, evm.TU.LG08.361
Plantaginaceae	Plantago ovata	8	Pov_00001727, Pov_00013984, Pov_00021122, Pov_00021955 ... Pov_00022078, Pov_00026761, Pov_00032856, Pov_00041531
Plumbaginaceae	Limonium bicolor	2	Lb4G21996, Lb4G21997
Poaceae	Echinochloa crus-galli	15	AH02.1033, AH03.3500, AH05.3151, AH07.2938, BH02.1088 ... BH03.3711, BH05.3210, BH07.2746, CH02.1210, CH02.2139, CH03.3917, CH05.3260, CH07.2835, CH09.2057, CH09.739
Poaceae	Eleusine coracana subsp. coracana	7	gene-QOZ80_1AG0005750, gene-QOZ80_2AG0140300 ... gene-QOZ80_2BG0195970, gene-QOZ80_7AG0574540, gene-QOZ80_7BG0605940, gene-QOZ80_8AG0625760, gene-QOZ80_8BG0655160
Poaceae	Hordeum vulgare	5	HORVU.MOREX.r3.2HG0131350.1 ... HORVU.MOREX.r3.5HG0534860.1.CDS1, HORVU.MOREX.r3.5HG0534870.1.CDS1, HORVU.MOREX.r3.6HG0555370.1.CDS1, HORVU.MOREX.r3.6HG0602640.1.CDS1
Poaceae	Lolium multiflorum	11	gene-QYE76_010636, gene-QYE76_010641, gene-QYE76_010642 ... gene-QYE76_016961, gene-QYE76_016962, gene-QYE76_024245, gene-QYE76_029236, gene-QYE76_040051, gene-QYE76_040052, gene-QYE76_055474, gene-QYE76_067302
Poaceae	Oryza coarctata	6	Oco01G006620, Oco02G006850, Oco03G017690, Oco04G018470 ... Oco13G010990, Oco14G011740
Poaceae	Oryza sativa	4	LOC_Os01g14630.1, LOC_Os02g44780.1, LOC_Os05g14580.1 ... LOC_Os07g39270.1
Poaceae	Paspalum vaginatum	4	gene-BS78_02G327900, gene-BS78_03G100700 ... gene-BS78_03G102600, gene-BS78_04G225600
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0304553, Pt_Chr0304622
Poaceae	Sporobolus alterniflorus	9	Chr02G025830, Chr05G003570, Chr06G005460, Chr0G008820 ... Chr15G007070, Chr19G003490, Chr24G011120, Chr27G013740, Chr28G010320
Poaceae	Thinopyrum elongatum	5	Tel2E01G369600, Tel6E01G226800, Tel6E01G228400 ... Tel6E01G230400, Tel6E01G471300
Poaceae	Triticum dicoccoides	10	gene_TRIDC1BG001990, gene_TRIDC1BG063770 ... gene_TRIDC2AG024000, gene_TRIDC2BG029210, gene_TRIDC6AG013010, gene_TRIDC6AG013220, gene_TRIDC6AG038930, gene_TRIDC6BG018230, gene_TRIDC6BG018550, gene_TRIDC6BG045750
Poaceae	Triticum aestivum	13	TraesCS2A02G187900.1, TraesCS2B02G219400.1 ... TraesCS2D02G199700.1, TraesCS6A02G100700.1.cds1, TraesCS6A02G102000.1, TraesCS6A02G252700.1.cds1, TraesCS6B02G128800.1.cds1, TraesCS6B02G130300.1, TraesCS6B02G272800.1.cds1, TraesCS6D02G081800.1.cds1, TraesCS6D02G090500.1, TraesCS6D02G234200.1.cds1, TraesCSU02G150900.1
Poaceae	Zea mays	5	Zm00001eb107690_P001, Zm00001eb186980_P001 ... Zm00001eb250080_P001, Zm00001eb325560_P001, Zm00001eb333900_P001
Poaceae	Zoysia japonica	5	nbis-gene-17856, nbis-gene-22331, nbis-gene-57575 ... nbis-gene-587, nbis-gene-7241
Poaceae	Zoysia macrostachya	5	Zma_g16841, Zma_g27930, Zma_g5428, Zma_g6719, Zma_g9770
Portulacaceae	Portulaca oleracea	7	evm.TU.LG02.1336, evm.TU.LG02.1778, evm.TU.LG04.1427 ... evm.TU.LG05.214, evm.TU.LG09.156, evm.TU.LG25.1096, evm.TU.LG25.241
Posidoniaceae	Posidonia oceanica	3	gene.Posoc02g17240, gene.Posoc03g26110, gene.Posoc04g07830
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_2_RagTag.55, evm.TU.Scaffold_3_RagTag.275 ... evm.TU.Scaffold_6_RagTag.1290
Rhizophoraceae	Carallia pectinifolia	4	nbisL1-mrna-16282, nbisL1-mrna-350, nbisL1-mrna-5150 ... nbisL1-mrna-519
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-10975, nbisL1-mrna-19631, nbisL1-mrna-4946
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-1131, nbisL1-mrna-6010, nbisL1-mrna-9318
Rhizophoraceae	Kandelia candel	3	add.evm.TU.utg000011l.318, add.evm.TU.utg000019l.450 ... evm.TU.utg000009l.1204
Rhizophoraceae	Kandelia obovata	3	Maker00004845, Maker00007243, Maker00012587
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-14101, nbisL1-mrna-19361, nbisL1-mrna-22195
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-2301, nbisL1-mrna-24114, nbisL1-mrna-3943
Salicaceae	Populus euphratica	8	populus_peu08658, populus_peu09624, populus_peu14250 ... populus_peu14258, populus_peu23522, populus_peu24906, populus_peu24907, populus_peu36694
Solanaceae	Lycium barbarum	5	gene-LOC132613998, gene-LOC132621659, gene-LOC132621662 ... gene-LOC132627971, gene-LOC132629922
Solanaceae	Solanum chilense	6	SOLCI000085500, SOLCI000543000, SOLCI002174100 ... SOLCI002174200, SOLCI002174300, SOLCI006501900
Solanaceae	Solanum pennellii	6	gene-LOC107004865, gene-LOC107010484, gene-LOC107011431 ... gene-LOC107011432, gene-LOC107015812, gene-LOC107031140
Tamaricaceae	Reaumuria soongarica	4	STRG.11741_chr02_+, STRG.8814_chr03_-, gene_1642, gene_1643
Tamaricaceae	Tamarix chinensis	3	TC04G2081, TC10G0184, TC11G0546
Zosteraceae	Zostera marina	2	Zosma01g04550.v3.1, Zosma03g02500.v3.1