Basic Information
Locus ID:
BniB05g000450.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
F-box Kelch-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B5 | 212285 | 213511 | + | BniB05g000450.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.18 | 45,956.84 Da | 53.94 | 79.22 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 26 | 71 | 4.6E-7 | IPR001810 |
| Pfam | PF01344 | Kelch motif | 133 | 170 | 4.6E-6 | IPR006652 |
| Pfam | PF01344 | Kelch motif | 174 | 211 | 9.8E-12 | IPR006652 |
| SUPERFAMILY | SSF117281 | Kelch motif | 77 | 390 | 1.31E-41 | IPR015915 |
| SUPERFAMILY | SSF81383 | F-box domain | 12 | 99 | 2.35E-5 | IPR036047 |
| Gene3D | G3DSA:2.120.10.80 | - | 117 | 375 | 6.4E-28 | IPR015915 |
| SMART | SM00612 | kelc_smart | 140 | 184 | 0.0066 | IPR006652 |
| SMART | SM00256 | fbox_2 | 30 | 70 | 6.0E-5 | IPR001810 |
| SMART | SM00612 | kelc_smart | 185 | 235 | 1.5 | IPR006652 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 24 | 70 | 10.928167 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61540.1 | Galactose oxidase/kelch repeat superfamily protein. | 0 |
| RefSeq | XP_018468036.1 | PREDICTED: F-box/kelch-repeat protein At4g39590-like [Raphanus sativus] | 0 |
| Q9SY96 | Putative F-box/kelch-repeat protein At1g61540 OS=Arabidopsis thaliana OX=3702 GN=At1g61540 PE=4 SV=1 | 0 | |
| TrEMBL | A0A6J0M8Y4 | F-box/kelch-repeat protein At4g39590-like OS=Raphanus sativus OX=3726 GN=LOC108839757 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G61540.1, AT4G39590.1 |
| Brassicaceae | Eutrema salsugineum | 4 | Thhalv10027031m.g.v1.0, Thhalv10029197m.g.v1.0 ... |
| Brassicaceae | Brassica nigra | 3 | BniB05g000430.2N, BniB05g000440.2N, BniB05g000450.2N |