Basic Information
Locus ID:
BniB05g000440.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
protein ubiquitination
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B5 | 210351 | 211556 | + | BniB05g000440.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.90 | 45,829.65 Da | 60.30 | 66.11 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01344 | Kelch motif | 129 | 175 | 1.4E-9 | IPR006652 |
| Pfam | PF01344 | Kelch motif | 185 | 219 | 2.3E-8 | IPR006652 |
| Pfam | PF00646 | F-box domain | 31 | 74 | 1.0E-8 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 32 | 108 | 1.05E-7 | IPR036047 |
| SUPERFAMILY | SSF117281 | Kelch motif | 83 | 384 | 4.58E-37 | IPR015915 |
| Gene3D | G3DSA:2.120.10.80 | - | 52 | 312 | 1.3E-25 | IPR015915 |
| SMART | SM00256 | fbox_2 | 35 | 75 | 2.1E-6 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 29 | 75 | 9.470975 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G39590.1 | Galactose oxidase/kelch repeat superfamily protein. | 0 |
| RefSeq | XP_018444793.1 | PREDICTED: putative F-box/kelch-repeat protein At1g61540 [Raphanus sativus] | 0 |
| Q1PE10 | F-box/kelch-repeat protein At4g39590 OS=Arabidopsis thaliana OX=3702 GN=At4g39590 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6J0KB40 | putative F-box/kelch-repeat protein At1g61540 OS=Raphanus sativus OX=3726 GN=LOC108816724 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G61540.1, AT4G39590.1 |
| Brassicaceae | Eutrema salsugineum | 4 | Thhalv10027031m.g.v1.0, Thhalv10029197m.g.v1.0 ... |
| Brassicaceae | Brassica nigra | 3 | BniB05g000430.2N, BniB05g000440.2N, BniB05g000450.2N |