Basic Information
Locus ID:
BniB05g000430.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
F-box Kelch-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B5 | 208271 | 209518 | + | BniB05g000430.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.50 | 47,771.70 Da | 50.83 | 73.52 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 37 | 82 | 9.0E-9 | IPR001810 |
| Pfam | PF01344 | Kelch motif | 141 | 189 | 4.6E-7 | IPR006652 |
| Pfam | PF01344 | Kelch motif | 194 | 236 | 5.5E-9 | IPR006652 |
| SUPERFAMILY | SSF81383 | F-box domain | 29 | 91 | 5.72E-6 | IPR036047 |
| SUPERFAMILY | SSF117281 | Kelch motif | 88 | 398 | 1.7E-36 | IPR015915 |
| Gene3D | G3DSA:2.120.10.80 | - | 102 | 371 | 1.2E-27 | IPR015915 |
| SMART | SM00256 | fbox_2 | 41 | 81 | 3.5E-4 | IPR001810 |
| SMART | SM00612 | kelc_smart | 148 | 203 | 0.038 | IPR006652 |
| SMART | SM00612 | kelc_smart | 204 | 261 | 10.0 | IPR006652 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 35 | 81 | 10.027357 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 14 | 28 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 34 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61540.1 | Galactose oxidase/kelch repeat superfamily protein. | 0 |
| RefSeq | XP_009125561.1 | putative F-box/kelch-repeat protein At1g61540 [Brassica rapa] | 0 |
| Q9SY96 | Putative F-box/kelch-repeat protein At1g61540 OS=Arabidopsis thaliana OX=3702 GN=At1g61540 PE=4 SV=1 | 0 | |
| TrEMBL | A0A8X7NUU6 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_090626 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G61540.1, AT4G39590.1 |
| Brassicaceae | Eutrema salsugineum | 4 | Thhalv10027031m.g.v1.0, Thhalv10029197m.g.v1.0 ... |
| Brassicaceae | Brassica nigra | 3 | BniB05g000430.2N, BniB05g000440.2N, BniB05g000450.2N |