Basic Information
Locus ID:
BniB05g000090.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Ras-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B5 | 41826 | 48718 | - | BniB05g000090.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.07 | 113,504.10 Da | 43.77 | 84.03 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01868 | Rab11_like | 15 | 179 | 3.36717E-117 | - |
| Pfam | PF00646 | F-box domain | 334 | 371 | 1.5E-4 | IPR001810 |
| Pfam | PF00464 | Serine hydroxymethyltransferase | 712 | 742 | 3.3E-6 | IPR039429 |
| Pfam | PF08268 | F-box associated domain | 534 | 662 | 2.5E-25 | IPR013187 |
| Pfam | PF00071 | Ras family | 19 | 178 | 3.0E-60 | IPR001806 |
| SUPERFAMILY | SSF53383 | PLP-dependent transferases | 718 | 774 | 6.42E-5 | IPR015424 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 14 | 186 | 1.1E-56 | IPR027417 |
| SUPERFAMILY | SSF81383 | F-box domain | 331 | 399 | 3.4E-10 | IPR036047 |
| Gene3D | G3DSA:3.40.640.10 | - | 712 | 742 | 4.2E-7 | IPR015421 |
| Gene3D | G3DSA:3.40.50.300 | - | 11 | 204 | 4.9E-69 | IPR027417 |
| SMART | SM00176 | ran_sub_2 | 23 | 231 | 1.4E-6 | - |
| SMART | SM00175 | rab_sub_5 | 18 | 181 | 4.4E-107 | - |
| SMART | SM00174 | rho_sub_3 | 20 | 177 | 4.9E-10 | IPR001806 |
| SMART | SM00173 | ras_sub_4 | 15 | 181 | 3.4E-23 | - |
| SMART | SM00177 | arf_sub_2 | 7 | 185 | 0.0044 | - |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 435 | 680 | 8.5E-32 | IPR017451 |
| TIGRFAM | TIGR00231 | small_GTP: small GTP-binding protein domain | 17 | 174 | 6.2E-34 | IPR005225 |
| ProSiteProfiles | PS51421 | small GTPase Ras family profile. | 12 | 333 | 17.278093 | IPR001806 |
| ProSiteProfiles | PS51420 | small GTPase Rho family profile. | 10 | 182 | 9.184954 | - |
| ProSiteProfiles | PS51419 | small GTPase Rab1 family profile. | 13 | 239 | 35.852882 | - |
| PRINTS | PR00449 | Transforming protein P21 ras signature | 18 | 39 | 1.7E-37 | - |
| PRINTS | PR00449 | Transforming protein P21 ras signature | 41 | 57 | 1.7E-37 | - |
| PRINTS | PR00449 | Transforming protein P21 ras signature | 121 | 134 | 1.7E-37 | - |
| PRINTS | PR00449 | Transforming protein P21 ras signature | 59 | 81 | 1.7E-37 | - |
| PRINTS | PR00449 | Transforming protein P21 ras signature | 156 | 178 | 1.7E-37 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 251 | 268 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 251 | 284 | - | - |
Gene Ontology
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G39990.1 | RAB GTPase homolog A4B. GTP-binding protein ATGB3 | 0 |
| RefSeq | XP_013637516.1 | PREDICTED: F-box protein At1g30790-like [Brassica oleracea var. oleracea] | 0 |
| Q9SMQ6 | Ras-related protein RABA4b OS=Arabidopsis thaliana OX=3702 GN=RABA4B PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7P286 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_094938 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G30790.1, AT1G32660.1 |
| Brassicaceae | Eutrema salsugineum | 8 | Thhalv10002533m.g.v1.0, Thhalv10007869m.g.v1.0 ... |
| Brassicaceae | Brassica nigra | 7 | BniB03g034380.2N, BniB03g069480.2N, BniB05g000090.2N ... |
| Plantaginaceae | Plantago ovata | 1 | Pov_00008690 |