Basic Information
Locus ID:
BniB04g063440.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane during regulated or polarized secretion. Involved in polarized cell growth and organ morphogenesis. During cytokinesis, involved in cell plate initiation, cell plate maturation and formation of new primary cell wall
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B4 | 54207886 | 54214132 | - | BniB04g063440.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.57 | 99,797.26 Da | 47.73 | 89.29 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF09763 | Exocyst complex component Sec3 | 506 | 868 | 6.4E-42 | IPR019160 |
| Pfam | PF15277 | Exocyst complex component SEC3 N-terminal PIP2 binding PH | 50 | 144 | 2.7E-20 | IPR028258 |
| Pfam | PF09763 | Exocyst complex component Sec3 | 224 | 499 | 1.6E-46 | IPR019160 |
| SMART | SM01313 | Sec3_PIP2_bind_2 | 48 | 146 | 3.9E-22 | IPR028258 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 542 | 561 | - | - |
| Coils | Coil | Coil | 281 | 301 | - | - |
| Coils | Coil | Coil | 221 | 248 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G47550.1 | exocyst complex component sec3A. Encodes a member of the exocyst complex gene family. The exocyst is a protein complex involved in tethering vesicles to the plasma membrane during regulated or polarized secretion. | 0 |
| RefSeq | XP_009118931.1 | exocyst complex component SEC3A [Brassica rapa] | 0 |
| Q9SX85 | Exocyst complex component SEC3A OS=Arabidopsis thaliana OX=3702 GN=SEC3A PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7V8W5 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_033827 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg10628, jg11927, jg6282 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_15316 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah002782 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g109570 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg41668, Sbi_jg48472 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg27779 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00025870, GOSA_00025871 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl53431, Sgl58696, Sgl79523, Sgl81991 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000004096, gene:ENSEOMG00000021685 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0012250, CQ.Regalona.r1.5BG0013110 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30045990 |
| Apiaceae | Apium graveolens | 2 | Ag11G03106, Ag2G00302 |
| Arecaceae | Cocos nucifera | 3 | COCNU_06G018100, COCNU_14G010030, scaffold016103G000030 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103707544, gene-LOC103721174 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_03.823.V1.1, AsparagusV1_07.764.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri18G20482, Ftri1G11120 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G47550.2, AT1G47560.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10011225m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g34560.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB04g063440.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G1662 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G1785 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno01g15140, gene.Cymno11g03510 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g05290 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.521 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00002405, Pov_00015930 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb5G27810, Lb7G33875, Lb7G33876 |
| Poaceae | Echinochloa crus-galli | 6 | AH01.1184, AH04.1101, CH01.1464, CH04.1196, CH04.2193 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_3AG0225730, gene-QOZ80_3BG0270770 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.4HG0341340.1, HORVU.MOREX.r3.4HG0343360.1 |
| Poaceae | Lolium multiflorum | 5 | gene-QYE76_062991, gene-QYE76_062994, gene-QYE76_063588 ... |
| Poaceae | Oryza coarctata | 4 | Oco05G018390, Oco06G019180, Oco21G004310, Oco22G005110 |
| Poaceae | Oryza sativa | 2 | LOC_Os03g42750.1, LOC_Os11g17600.3 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G150700, gene-BS78_08G095500 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0103991, Pt_Chr0104417 |
| Poaceae | Sporobolus alterniflorus | 7 | Chr01G009360, Chr04G024530, Chr07G018340, Chr07G023240 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel4E01G115900, Tel4E01G131700 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC4AG036860, gene_TRIDC4AG038340 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS4A02G233400.1, TraesCS4A02G243100.3 ... |
| Poaceae | Zea mays | 3 | Zm00001eb051220_P002, Zm00001eb168780_P001 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-20373, nbis-gene-39696, nbis-gene-43452 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g18686, Zma_g3253, Zma_g924 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG04.2705, evm.TU.LG08.342, evm.TU.LG18.483 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc03g28270, gene.Posoc04g06650 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_7_RagTag.530, evm.TU.Scaffold_8_RagTag.1051 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-19099, nbisL1-mrna-8984 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-6028, nbisL1-mrna-9169 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-15413, nbisL1-mrna-21868 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000002l.533, evm.TU.utg000018l.349 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00003441, Maker00011961 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-5840 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-12465, nbisL1-mrna-24088 |
| Salicaceae | Populus euphratica | 2 | populus_peu31932, populus_peu31933 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132604116, gene-LOC132618188 |
| Solanaceae | Solanum chilense | 1 | SOLCI007325100 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107007175, gene-LOC107026072 |
| Tamaricaceae | Reaumuria soongarica | 3 | gene_1342, gene_15182, gene_4143 |
| Tamaricaceae | Tamarix chinensis | 2 | TC03G2078, TC06G1642 |
| Zosteraceae | Zostera marina | 2 | Zosma06g01640.v3.1, Zosma06g06920.v3.1 |