Basic Information
Locus ID:
BniB04g063260.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Belongs to the adaptor complexes small subunit family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B4 | 54052266 | 54053208 | + | BniB04g063260.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.89 | 17,083.60 Da | 43.96 | 107.68 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14833 | AP2_sigma | 1 | 141 | 2.40163E-93 | IPR027156 |
| Pfam | PF01217 | Clathrin adaptor complex small chain | 1 | 141 | 1.4E-53 | IPR022775 |
| SUPERFAMILY | SSF64356 | SNARE-like | 1 | 136 | 2.29E-45 | IPR011012 |
| Gene3D | G3DSA:3.30.450.60 | - | 1 | 142 | 2.7E-60 | - |
| PIRSF | PIRSF015588 | AP_complex_sigma | 1 | 142 | 2.7E-64 | IPR016635 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G47830.1 | SNARE-like superfamily protein. | 0 |
| RefSeq | XP_013588229.1 | PREDICTED: AP-2 complex subunit sigma [Brassica oleracea var. oleracea] | 0 |
| Q84WL9 | AP-2 complex subunit sigma OS=Arabidopsis thaliana OX=3702 GN=AP17 PE=2 SV=1 | 0 | |
| TrEMBL | A0A1J3DI05 | AP complex subunit sigma OS=Noccaea caerulescens OX=107243 GN=GA_TR6591_c0_g1_i1_g.22319 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg6351 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_24103 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah026867 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g130690 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg13692, Sbi_jg52216 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg9628 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00017653 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl33236, Sgl38625 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000000340, gene:ENSEOMG00000002332 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0020180, CQ.Regalona.r1.6BG0021260 |
| Apiaceae | Apium graveolens | 1 | Ag4G02247 |
| Arecaceae | Cocos nucifera | 2 | COCNU_07G001700, COCNU_10G001210 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103703875, gene-LOC103719893 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_04.1239.V1.1, AsparagusV1_10.300.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri1G18718 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G47830.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10003287m.g.v1.0, Thhalv10011851m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 2 | Sp2g06950.v2.2, SpUn0014_0100.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g060320.2N, BniB04g018250.2N, BniB04g063260.2N |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno10g04410 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0208s00019.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g02460 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-1360 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.693 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00026178 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G24389 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.447, BH05.501, CH05.568 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0385110, gene-QOZ80_5BG0432100 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0452250.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_002731, gene-QYE76_064211 |
| Poaceae | Oryza coarctata | 2 | Oco23G003650, Oco24G003230 |
| Poaceae | Oryza sativa | 1 | LOC_Os12g10560.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_05G116600, gene-BS78_08G061500 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0301067, Pt_Chr0301072, Pt_Chr0502025 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr06G025800, Chr19G013510, Chr27G002400 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G215800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG017690, gene_TRIDC5BG018850 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G112300.2, TraesCS5B02G113000.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb112310_P001, Zm00001eb138360_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-25427 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g24879, Zma_g25618 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG05.352, evm.TU.LG25.960 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g07970 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_8_RagTag.1096, evm.TU.Scaffold_8_RagTag.1220 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-11565, nbisL1-mrna-13913 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-15458, nbisL1-mrna-20729 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000018l.368, evm.TU.utg000018l.387 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00003136, Maker00003747 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-13374, nbisL1-mrna-3016 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-11094, nbisL1-mrna-20273 |
| Salicaceae | Populus euphratica | 2 | populus_peu15342, populus_peu32990 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132628117 |
| Solanaceae | Solanum chilense | 1 | SOLCI004449100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107015778 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_16247 |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G0143 |
| Zosteraceae | Zostera marina | 1 | Zosma01g26450.v3.1 |