Basic Information
Locus ID:
BniB04g063010.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Vacuolar protein sorting-associated protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B4 | 53699972 | 53724406 | + | BniB04g063010.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.86 | 462,848.53 Da | 45.88 | 87.54 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 2682 | 2788 | 1.98798E-7 | - |
| Pfam | PF00168 | C2 domain | 2681 | 2790 | 5.5E-5 | IPR000008 |
| Pfam | PF16908 | Vacuolar sorting-associated protein 13, N-terminal | 166 | 417 | 1.1E-70 | IPR031646 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 2289 | 2429 | 4.4E-8 | IPR009291 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 2038 | 2206 | 6.1E-12 | IPR009291 |
| Pfam | PF16910 | Repeating coiled region of VPS13 | 611 | 840 | 2.2E-37 | IPR031642 |
| Pfam | PF12624 | N-terminal region of Chorein or VPS13 | 2 | 142 | 4.3E-29 | IPR026854 |
| Pfam | PF06650 | SHR-binding domain of vacuolar-sorting associated protein 13 | 3178 | 3482 | 7.1E-12 | IPR009543 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 2662 | 2789 | 1.57E-7 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 2663 | 2822 | 2.5E-8 | IPR035892 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 2659 | 2802 | 10.379084 | IPR000008 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2251 | 2270 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 4133 | 4163 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 482 | 502 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 3503 | 3523 | - | - |
| Coils | Coil | Coil | 662 | 682 | - | - |
| Coils | Coil | Coil | 134 | 154 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48090.4 | - | 0 |
| RefSeq | XP_033128618.1 | uncharacterized protein LOC103871499 isoform X1 [Brassica rapa] | 0 |
| G0S3B8 | Intermembrane lipid transfer protein VPS13 OS=Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) OX=759272 GN=VPS13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A816PX75 | (rape) hypothetical protein OS=Brassica napus OX=3708 GN=DARMORV10_C06P02470.1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology