Basic Information
Locus ID:
BniB04g062980.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Glycosyl hydrolases family 28
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B4 | 53671602 | 53674558 | - | BniB04g062980.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.81 | 50,775.58 Da | 50.57 | 77.00 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00295 | Glycosyl hydrolases family 28 | 110 | 425 | 3.6E-86 | IPR000743 |
| SUPERFAMILY | SSF51126 | Pectin lyase-like | 77 | 459 | 3.14E-125 | IPR011050 |
| Gene3D | G3DSA:2.160.20.10 | - | 70 | 455 | 4.1E-117 | IPR012334 |
| SMART | SM00710 | pbh1 | 239 | 265 | 510.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 319 | 340 | 2.8 | IPR006626 |
| SMART | SM00710 | pbh1 | 348 | 369 | 1200.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 266 | 287 | 510.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 289 | 309 | 9700.0 | IPR006626 |
| ProSitePatterns | PS00502 | Polygalacturonase active site. | 296 | 309 | - | IPR000743 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 35 | 61 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 38 | 61 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48100.1 | Pectin lyase-like superfamily protein. | 0 |
| RefSeq | XP_013699328.1 | polygalacturonase At1g48100 [Brassica napus] | 0 |
| Q949Z1 | Polygalacturonase At1g48100 OS=Arabidopsis thaliana OX=3702 GN=At1g48100 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X7SD80 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_033789 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology