Basic Information
Locus ID:
BniB04g062290.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B4 | 53234319 | 53235005 | + | BniB04g062290.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.43 | 25,636.45 Da | 57.69 | 76.89 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 176 | 218 | 9.2E-14 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 147 | 222 | 5.74E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 129 | 224 | 1.7E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 177 | 217 | 1.3E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 177 | 218 | 13.049892 | IPR001841 |
| Coils | Coil | Coil | 157 | 177 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G18760.1 | Zinc finger, C3HC4 type (RING finger) family protein. | 0 |
| RefSeq | XP_018477190.1 | PREDICTED: E3 ubiquitin ligase BIG BROTHER-related-like [Raphanus sativus] | 0 |
| Q6AXU4 | E3 ubiquitin-protein ligase RNF181 OS=Rattus norvegicus OX=10116 GN=Rnf181 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7SGN9 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_033746 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 3 | AT1G18760.1, AT1G21960.1, AT3G13228.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10009703m.g.v1.0, Thhalv10010983m.g.v1.0 |
| Brassicaceae | Brassica nigra | 7 | BniB03g007820.2N, BniB03g007840.2N, BniB04g033350.2N ... |