Basic Information
Locus ID:
BniB04g062250.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B4 | 53219636 | 53221562 | + | BniB04g062250.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.86 | 47,162.12 Da | 63.51 | 66.78 | -0.65 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 295 | 323 | 1.9E-7 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 334 | 357 | 6.8E-7 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 292 | 322 | 1.02E-5 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 330 | 363 | 3.14E-6 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 364 | 397 | 6.1E-10 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 290 | 325 | 1.7E-11 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 252 | 287 | 6.1E-8 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 326 | 363 | 5.7E-13 | - |
| SMART | SM00547 | zf_4 | 336 | 360 | 2.9E-5 | IPR001876 |
| SMART | SM00547 | zf_4 | 369 | 393 | 0.042 | IPR001876 |
| SMART | SM00547 | zf_4 | 260 | 284 | 0.023 | IPR001876 |
| SMART | SM00547 | zf_4 | 297 | 321 | 6.2E-6 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 257 | 287 | 8.286985 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 367 | 396 | 9.551712 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 295 | 324 | 9.698511 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 334 | 363 | 10.30829 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 338 | 357 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 371 | 390 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 262 | 281 | - | IPR001876 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48570.1 | zinc finger (Ran-binding) family protein. | 0 |
| RefSeq | XP_018461833.1 | PREDICTED: zinc finger protein VAR3, chloroplastic-like [Raphanus sativus] | 0 |
| TrEMBL | A0A6J0LPQ1 | zinc finger protein VAR3, chloroplastic-like OS=Raphanus sativus OX=3726 GN=LOC108832874 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology