Basic Information
Locus ID:
BniB04g061870.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
AMSH-like ubiquitin thioesterase 1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B4 | 52995674 | 52998980 | + | BniB04g061870.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.33 | 57,434.59 Da | 62.20 | 79.88 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08066 | MPN_AMSH_like | 335 | 509 | 2.58481E-108 | IPR044098 |
| Pfam | PF08969 | USP8 dimerisation domain | 7 | 104 | 1.8E-11 | IPR015063 |
| Pfam | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 333 | 438 | 7.3E-18 | IPR000555 |
| SUPERFAMILY | SSF102712 | JAB1/MPN domain | 335 | 465 | 2.35E-20 | - |
| Gene3D | G3DSA:1.20.58.80 | - | 4 | 119 | 5.4E-30 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 323 | 509 | 2.5E-70 | - |
| SMART | SM00232 | pad1_6 | 334 | 462 | 1.8E-16 | IPR000555 |
| ProSiteProfiles | PS50249 | MPN domain profile. | 335 | 465 | 30.671305 | IPR037518 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 239 | 260 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48790.1 | associated molecule with the SH3 domain of STAM 1. | 0 |
| RefSeq | XP_022576255.2 | AMSH-like ubiquitin thioesterase 1 [Brassica napus] | 0 |
| Q8VYB5 | AMSH-like ubiquitin thioesterase 1 OS=Arabidopsis thaliana OX=3702 GN=AMSH1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X7SGM2 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_033716 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology