Basic Information
Locus ID:
BniB04g061440.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
DENN domain and WD repeat-containing protein SCD1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B4 | 52576336 | 52577165 | + | BniB04g061440.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.48 | 17,663.83 Da | 33.67 | 89.21 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 4 | 145 | 2.29E-18 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 3 | 159 | 2.5E-16 | IPR015943 |
| SMART | SM00320 | WD40_4 | 22 | 61 | 7.4E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 66 | 103 | 180.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 29 | 61 | 11.009724 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 29 | 61 | 9.230148 | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G49040.1 | stomatal cytokinesis defective / SCD1 protein (SCD1). Encodes soluble protein containing N-terminal DENN domain and eight C-terminal WD-40 repeats. Involved in cytokinesis of guard mother cells and leaf epidermal cells. The overall growth and development of mutant plants is severely affected, they are smaller than wt, with defects in seedling development, leaf expansion and flower morphology which renders the mutant conditionally sterile. | 0 |
| RefSeq | XP_013591806.1 | PREDICTED: DENN domain and WD repeat-containing protein SCD1 [Brassica oleracea var. oleracea] | 0 |
| Q8RXA7 | DENN domain and WD repeat-containing protein SCD1 OS=Arabidopsis thaliana OX=3702 GN=SCD1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7SF66 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_033694 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Brassica nigra | 1 | BniB04g061440.2N |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_012975 |