Basic Information
Locus ID:
BniB04g060520.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B4 | 51643994 | 51649846 | - | BniB04g060520.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.58 | 64,899.03 Da | 58.01 | 77.42 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 151 | 189 | 6.4E-5 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 150 | 230 | 3.01E-10 | IPR036047 |
| SUPERFAMILY | SSF117281 | Kelch motif | 265 | 395 | 8.76E-5 | IPR015915 |
| SUPERFAMILY | SSF81383 | F-box domain | 14 | 60 | 3.27E-5 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 146 | 189 | 3.0E-6 | - |
| SMART | SM00256 | fbox_2 | 151 | 191 | 5.6E-4 | IPR001810 |
| SMART | SM00256 | fbox_2 | 13 | 45 | 8.1 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 145 | 194 | 9.550458 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 1 | 44 | 9.68293 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 127 | 143 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 126 | 147 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G49990.1 | F-box family protein. | 0 |
| RefSeq | XP_018440076.1 | PREDICTED: F-box protein At1g49990-like [Raphanus sativus] | 0 |
| Q9LPM2 | F-box protein At1g49990 OS=Arabidopsis thaliana OX=3702 GN=At1g49990 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X7SEC0 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_033443 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 10 | AT1G15680.1, AT1G49990.1, AT3G23950.1, AT3G23970.1 ... |
| Brassicaceae | Eutrema salsugineum | 14 | Thhalv10000704m.g.v1.0, Thhalv10001535m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 6 | Sp1g36850.v2.2, Sp2g04630.v2.2, Sp3g21990.v2.2 ... |
| Brassicaceae | Brassica nigra | 20 | BniB01g029840.2N, BniB01g029880.2N, BniB01g037070.2N ... |
| Plantaginaceae | Plantago ovata | 1 | Pov_00032378 |