Basic Information
Locus ID:
BniB04g060490.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
protein folding in endoplasmic reticulum
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B4 | 51636974 | 51640748 | + | BniB04g060490.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.39 | 92,827.05 Da | 61.56 | 75.36 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 394 | 434 | 6.7E-8 | IPR001810 |
| Pfam | PF00646 | F-box domain | 12 | 49 | 6.4E-6 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 394 | 465 | 5.1E-11 | IPR036047 |
| SUPERFAMILY | SSF81383 | F-box domain | 10 | 66 | 3.79E-11 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 390 | 435 | 1.7E-7 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 7 | 50 | 8.1E-7 | - |
| SMART | SM00256 | fbox_2 | 11 | 51 | 2.9E-7 | IPR001810 |
| SMART | SM00256 | fbox_2 | 396 | 436 | 2.9E-7 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 5 | 50 | 11.034144 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 390 | 435 | 10.371784 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 365 | 379 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 365 | 392 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G49990.1 | F-box family protein. | 0 |
| RefSeq | XP_018435928.1 | PREDICTED: F-box protein At1g49990-like [Raphanus sativus] | 0 |
| Q9LPM2 | F-box protein At1g49990 OS=Arabidopsis thaliana OX=3702 GN=At1g49990 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X7SE81 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_033447 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 10 | AT1G15680.1, AT1G49990.1, AT3G23950.1, AT3G23970.1 ... |
| Brassicaceae | Eutrema salsugineum | 14 | Thhalv10000704m.g.v1.0, Thhalv10001535m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 6 | Sp1g36850.v2.2, Sp2g04630.v2.2, Sp3g21990.v2.2 ... |
| Brassicaceae | Brassica nigra | 20 | BniB01g029840.2N, BniB01g029880.2N, BniB01g037070.2N ... |
| Plantaginaceae | Plantago ovata | 1 | Pov_00032378 |