Basic Information
Locus ID:
BniB04g060030.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
SNF2 domain-containing protein helicase domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B4 | 51259172 | 51263523 | - | BniB04g060030.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.60 | 106,211.10 Da | 44.33 | 80.11 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18008 | DEXDc_SHPRH-like | 221 | 556 | 4.99515E-88 | - |
| CDD | cd18793 | SF2_C_SNF | 815 | 919 | 1.88628E-54 | - |
| Pfam | PF00176 | SNF2 family N-terminal domain | 238 | 634 | 6.4E-70 | IPR000330 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 811 | 910 | 2.1E-15 | IPR001650 |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 670 | 714 | 1.7E-8 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 658 | 713 | 4.37E-13 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 203 | 556 | 2.98E-47 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 564 | 967 | 1.95E-56 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 445 | 569 | 6.0E-31 | IPR038718 |
| Gene3D | G3DSA:3.40.50.300 | - | 571 | 968 | 1.5E-63 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 192 | 310 | 2.4E-11 | IPR038718 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 655 | 720 | 1.7E-14 | IPR013083 |
| Gene3D | G3DSA:3.40.50.10810 | - | 314 | 409 | 2.4E-11 | IPR038718 |
| SMART | SM00490 | helicmild6 | 827 | 910 | 2.3E-18 | IPR001650 |
| SMART | SM00184 | ring_2 | 671 | 709 | 1.1E-6 | IPR001841 |
| SMART | SM00487 | ultradead3 | 217 | 535 | 2.0E-28 | IPR014001 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 671 | 710 | 12.474524 | IPR001841 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 790 | 963 | 14.452614 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 236 | 518 | 11.596804 | IPR014001 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 686 | 695 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 18 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 35 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 430 | 452 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50410.1 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_013592059.1 | PREDICTED: uncharacterized ATP-dependent helicase C23E6.02 [Brassica oleracea var. oleracea] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3P6GK54 | Helicase-like transcription factor CHR28 OS=Brassica oleracea OX=3712 GN=BOLC6T35669H PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology