Basic Information
Locus ID:
BniB04g058240.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B4 | 50035521 | 50038530 | - | BniB04g058240.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.49 | 53,684.36 Da | 47.23 | 75.99 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 198 | 235 | 0.092 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 41 | 476 | 2.0E-34 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 71 | 482 | 5.4E-27 | IPR015943 |
| SMART | SM00320 | WD40_4 | 33 | 68 | 6.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 308 | 343 | 460.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 446 | 483 | 240.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 196 | 235 | 0.039 | IPR001680 |
| SMART | SM00320 | WD40_4 | 106 | 146 | 59.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 249 | 286 | 14.0 | IPR001680 |
| PIRSF | PIRSF037309 | PPA2_B55 | 10 | 484 | 6.6E-189 | IPR000009 |
| ProSitePatterns | PS01025 | Protein phosphatase 2A regulatory subunit PR55 signature 2. | 205 | 219 | - | IPR018067 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 292 | 319 | 1.5E-156 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 122 | 150 | 1.5E-156 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 453 | 482 | 1.5E-156 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 263 | 291 | 1.5E-156 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 320 | 347 | 1.5E-156 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 47 | 67 | 1.5E-156 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 93 | 121 | 1.5E-156 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 235 | 262 | 1.5E-156 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 374 | 400 | 1.5E-156 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 207 | 234 | 1.5E-156 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 348 | 373 | 1.5E-156 | IPR000009 |
Gene Ontology
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
ko03015 (mRNA surveillance pathway)
map03015 (mRNA surveillance pathway)
ko04071 (Sphingolipid signaling pathway)
map04071 (Sphingolipid signaling pathway)
ko04111 (Cell cycle - yeast)
map04111 (Cell cycle - yeast)
ko04151 (PI3K-Akt signaling pathway)
map04151 (PI3K-Akt signaling pathway)
ko04152 (AMPK signaling pathway)
map04152 (AMPK signaling pathway)
ko04390 (Hippo signaling pathway)
map04390 (Hippo signaling pathway)
ko04391 (Hippo signaling pathway - fly)
map04391 (Hippo signaling pathway - fly)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G51690.2 | protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform. 55 kDa B regulatory subunit of phosphatase 2A mRNA, | 0 |
| RefSeq | XP_022542993.2 | serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform isoform X4 [Brassica napus] | 0 |
| Q38821 | Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform OS=Arabidopsis thaliana OX=3702 GN=PP2AB1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8X7SCW3 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_033624 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology