Basic Information
Locus ID:
BniB04g057040.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
homeobox-leucine zipper protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B4 | 49072155 | 49073214 | - | BniB04g057040.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.74 | 9,833.18 Da | 44.20 | 94.16 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 4 | 33 | 2.44E-5 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 60 | 1.2E-5 | IPR015943 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17920.1 | homeodomain GLABROUS 12. Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. Together with HDG11, it is involved in trichome branching. | 0 |
| RefSeq | XP_018451634.1 | PREDICTED: homeobox-leucine zipper protein HDG12-like isoform X3 [Raphanus sativus] | 0 |
| Q9LMT8 | Homeobox-leucine zipper protein HDG12 OS=Arabidopsis thaliana OX=3702 GN=HDG12 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7W133 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_013523 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg1000, jg28756 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_21634, gene_21638 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah010250 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g217550 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg12453, Sbi_jg45863 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg20220 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00022438 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl56089, Sgl61422, Sgl61657 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000020222, gene:ENSEOMG00000036532 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7BG0007760, CQ.Regalona.r1.9AG0016760 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30114200 |
| Apiaceae | Apium graveolens | 2 | Ag6G02583, Ag9G00099 |
| Arecaceae | Cocos nucifera | 3 | COCNU_06G019180, COCNU_14G009540, scaffold001875G000010 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103702709, gene-LOC103705391 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_03.682.V1.1, AsparagusV1_07.3155.V1.1 ... |
| Asteraceae | Flaveria trinervia | 3 | Ftri3G01076, Ftri4G27553, Ftri8G00682 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G34460.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10025475m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g32260.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB02g087020.2N, BniB03g020680.2N, BniB04g057040.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G0090 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G0106 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno06g01370, gene.Cymno14g06510 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g32100 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG08.126 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00035807 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb2G10391, Lb2G13465, Lb3G17244 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.1407, BH01.1244, CH01.1288 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0222350, gene-QOZ80_3BG0267440 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0333760.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_063185 |
| Poaceae | Oryza coarctata | 2 | Oco05G019840, Oco06G020650 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g46650.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G131200 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0104764, Pt_Chr0105153 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G008620, Chr04G025640, Chr07G024520, Chr12G028630 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G042600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG045230, gene_TRIDC4BG003440 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G294000.1, TraesCS4B02G019900.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb052290_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-20584 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g3115, Zma_g788 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG08.1842, evm.TU.LG22.22 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc03g26430, gene.Posoc06g18490 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_1_RagTag.2278, evm.TU.Scaffold_2_RagTag.224 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-4983 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-14094, nbisL1-mrna-18731 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-3282, nbisL1-mrna-9899 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000009l.819, evm.TU.utg000016l.94 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00005869, Maker00017326 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-14743, nbisL1-mrna-4652 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-22418 |
| Salicaceae | Populus euphratica | 2 | populus_peu08882, populus_peu36467 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132599163 |
| Solanaceae | Solanum chilense | 1 | SOLCI000662500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107006105 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.18264_chr09_+, gene_7825 |
| Tamaricaceae | Tamarix chinensis | 2 | TC10G0478, TC12G1042 |
| Zosteraceae | Zostera marina | 1 | Zosma06g02540.v3.1 |