Basic Information
Locus ID:
BniB04g056380.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
RING-H2 finger protein ATL19
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B4 | 48218360 | 48218758 | - | BniB04g056380.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.52 | 14,788.18 Da | 66.98 | 129.70 | 0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53010.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_013591217.1 | PREDICTED: putative RING-H2 finger protein ATL19 [Brassica oleracea var. oleracea] | 0 |
| Q9C919 | Putative RING-H2 finger protein ATL19 OS=Arabidopsis thaliana OX=3702 GN=ATL19 PE=3 SV=1 | 0 | |
| TrEMBL | A0A8X7SCQ7 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_033365 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Anacardiaceae | Pistacia vera | 2 | pistato.v30160990, pistato.v30161370 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G53010.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012307m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g39570.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB04g056380.2N |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.1613 |