Basic Information
Locus ID:
BniB04g056000.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
F-box LRR-repeat kelch-repeat protein At1g11620
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B4 | 47863047 | 47863728 | + | BniB04g056000.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.68 | 14,187.22 Da | 56.69 | 78.78 | -0.70 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 4 | 44 | 4.7E-8 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 4 | 84 | 1.44E-13 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 2 | 44 | 1.1E-7 | - |
| SMART | SM00256 | fbox_2 | 7 | 47 | 7.3E-4 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 1 | 50 | 11.219605 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G24510.1 | F-box associated ubiquitination effector family protein. | 0 |
| RefSeq | XP_019085645.1 | PREDICTED: putative F-box/kelch-repeat protein At3g17540 [Camelina sativa] | 0 |
| Q9LUP4 | Putative F-box/kelch-repeat protein At3g17540 OS=Arabidopsis thaliana OX=3702 GN=At3g17540 PE=4 SV=1 | 0 | |
| TrEMBL | A0A0D3CQP3 | F-box domain-containing protein OS=Brassica oleracea var. oleracea OX=109376 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Arecaceae | Cocos nucifera | 1 | COCNU_01G005860 |
| Brassicaceae | Arabidopsis thaliana | 81 | AT1G11620.1, AT1G25141.1, AT1G50470.1, AT1G62270.1 ... |
| Brassicaceae | Eutrema salsugineum | 96 | Thhalv10000454m.g.v1.0, Thhalv10000467m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 15 | Sp1g20770.v2.2, Sp3g14050.v2.2, Sp3g15200.v2.2 ... |
| Brassicaceae | Brassica nigra | 83 | BniB01g038780.2N, BniB01g039020.2N, BniB01g039120.2N ... |