Basic Information
Locus ID:
BniB04g054880.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Oligouridylate-binding protein
Maps and Mapping Data
| Chromosome/Scaffold | Start | End | Strand | ID |
|---|---|---|---|---|
| B4 | 45518649 | 45521154 | + | BniB04g054880.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.73 | 46,687.90 Da | 49.56 | 65.92 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12619 | RRM2_PUB1 | 146 | 220 | 3.79357E-52 | - |
| CDD | cd12352 | RRM1_TIA1_like | 62 | 132 | 2.37795E-35 | - |
| CDD | cd12354 | RRM3_TIA1_like | 268 | 343 | 1.17555E-31 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 147 | 217 | 3.9E-20 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 62 | 128 | 1.8E-11 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 270 | 329 | 4.2E-12 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 257 | 349 | 5.37E-21 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 58 | 223 | 3.06E-44 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 143 | 225 | 9.6E-27 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 1 | 142 | 1.3E-23 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 243 | 347 | 1.7E-21 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 269 | 339 | 4.3E-15 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 61 | 130 | 1.7E-15 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 146 | 219 | 2.5E-26 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 268 | 343 | 15.51092 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 145 | 223 | 18.615002 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 60 | 134 | 14.521706 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G54080.1 | oligouridylate-binding protein 1A. | 0 |
| RefSeq | XP_018438169.1 | PREDICTED: oligouridylate-binding protein 1A isoform X1 [Raphanus sativus] | 0 |
| Q9SYG4 | Oligouridylate-binding protein 1A OS=Arabidopsis thaliana OX=3702 GN=UBP1A PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7V8I0 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_033437 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology