halophFGD

Basic Information

Locus ID: BniB04g054110.2N

Species & Taxonomic ID: Brassica nigra & 3710

Genome Assembly: N100

Description: F-box kelch-repeat protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
B4	44555683	44556831	-	BniB04g054110.2N

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.33	43,966.64 Da	40.53	99.74	0.14

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00646	F-box domain	12	48	7.1E-9	IPR001810
SUPERFAMILY	SSF50965	Galactose oxidase, central domain	184	362	2.09E-5	IPR011043
SUPERFAMILY	SSF81383	F-box domain	12	60	1.13E-11	IPR036047
Gene3D	G3DSA:1.20.1280.50	-	3	84	4.2E-6	-
SMART	SM00256	fbox_2	14	54	1.8E-7	IPR001810
TIGRFAM	TIGR01640	F_box_assoc_1: F-box protein interaction domain	109	289	6.8E-12	IPR017451
ProSiteProfiles	PS50181	F-box domain profile.	8	53	8.543671	IPR001810

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description	E-value
TAIR	AT1G09650.1	F-box and associated interaction domains-containing protein.	0
RefSeq	XP_018453478.1	PREDICTED: F-box protein At1g11270-like [Raphanus sativus]	0
Swiss-Prot	O04488	F-box/LRR-repeat/kelch-repeat protein At1g09650 OS=Arabidopsis thaliana OX=3702 GN=At1g09650 PE=2 SV=1	0
TrEMBL	A0A8X7SE34	Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_033224 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Brassicaceae	Arabidopsis thaliana	15	AT1G09650.1, AT1G11270.1, AT1G12490.1, AT1G12855.1 ... AT1G12870.1, AT1G13200.1, AT1G14315.2, AT1G15015.1, AT2G02030.1, AT2G05600.1, AT2G34280.1, AT3G25550.1, AT4G01640.1, AT5G10340.1, AT5G16285.1
Brassicaceae	Eutrema salsugineum	30	Thhalv10000283m.g.v1.0, Thhalv10002950m.g.v1.0 ... Thhalv10003053m.g.v1.0, Thhalv10005403m.g.v1.0, Thhalv10005596m.g.v1.0, Thhalv10005640m.g.v1.0, Thhalv10005659m.g.v1.0, Thhalv10005704m.g.v1.0, Thhalv10006448m.g.v1.0, Thhalv10006469m.g.v1.0, Thhalv10007816m.g.v1.0, Thhalv10007821m.g.v1.0, Thhalv10009459m.g.v1.0, Thhalv10009591m.g.v1.0, Thhalv10009680m.g.v1.0, Thhalv10009780m.g.v1.0, Thhalv10009873m.g.v1.0, Thhalv10010027m.g.v1.0, Thhalv10011073m.g.v1.0, Thhalv10012265m.g.v1.0, Thhalv10016004m.g.v1.0, Thhalv10017550m.g.v1.0, Thhalv10017844m.g.v1.0, Thhalv10021927m.g.v1.0, Thhalv10021998m.g.v1.0, Thhalv10022335m.g.v1.0, Thhalv10023120m.g.v1.0, Thhalv10026946m.g.v1.0, Thhalv10028258m.g.v1.0, Thhalv10028312m.g.v1.0
Brassicaceae	Schrenkiella parvula	4	Sp1g27610.v2.2, Sp2g14700.v2.2, Sp6g09040.v2.2 ... SpUn0138_0020.v2.2
Brassicaceae	Brassica nigra	27	BniB01g008490.2N, BniB02g006100.2N, BniB02g006160.2N ... BniB02g007700.2N, BniB02g007710.2N, BniB02g007720.2N, BniB02g007750.2N, BniB02g042290.2N, BniB02g042300.2N, BniB02g044690.2N, BniB02g052300.2N, BniB03g005530.2N, BniB03g006010.2N, BniB03g015920.2N, BniB03g022450.2N, BniB04g008600.2N, BniB04g009830.2N, BniB04g009870.2N, BniB04g014510.2N, BniB04g027260.2N, BniB04g039550.2N, BniB04g054100.2N, BniB04g054110.2N, BniB05g015500.2N, BniB05g065960.2N, BniB07g019140.2N, BniB08g072430.2N
Plantaginaceae	Plantago ovata	1	Pov_00035511