Basic Information
Locus ID:
BniB04g053820.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
high mobility group
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B4 | 44341904 | 44343196 | - | BniB04g053820.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.37 | 30,908.92 Da | 47.94 | 74.30 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01390 | HMGB-UBF_HMG-box | 221 | 268 | 1.82275E-8 | - |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 45 | 127 | 1.6E-12 | IPR001606 |
| SUPERFAMILY | SSF47095 | HMG-box | 221 | 267 | 1.14E-7 | IPR036910 |
| SUPERFAMILY | SSF46774 | ARID-like | 38 | 134 | 1.09E-23 | IPR036431 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 220 | 270 | 1.1E-7 | IPR036910 |
| Gene3D | G3DSA:1.10.150.60 | - | 31 | 147 | 5.5E-21 | IPR036431 |
| SMART | SM00501 | bright_3 | 41 | 132 | 1.5E-23 | IPR001606 |
| SMART | SM01014 | ARID_2 | 37 | 127 | 1.4E-20 | - |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 221 | 270 | 9.139562 | IPR009071 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 40 | 131 | 21.194389 | IPR001606 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G55650.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_018486180.1 | PREDICTED: putative high mobility group B protein 11 [Raphanus sativus] | 0 |
| Q9LG02 | Putative high mobility group B protein 11 OS=Arabidopsis thaliana OX=3702 GN=HMGB11 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8X7SEJ5 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_033193 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology