Basic Information
Locus ID:
BniB04g053800.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
phosphatidylinositol phosphatidylcholine transfer protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B4 | 44326922 | 44333272 | + | BniB04g053800.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.24 | 122,336.75 Da | 44.41 | 76.17 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00170 | SEC14 | 163 | 328 | 1.62167E-39 | IPR001251 |
| Pfam | PF00400 | WD domain, G-beta repeat | 937 | 974 | 0.002 | IPR001680 |
| Pfam | PF00650 | CRAL/TRIO domain | 162 | 329 | 3.5E-32 | IPR001251 |
| SUPERFAMILY | SSF46938 | CRAL/TRIO N-terminal domain | 88 | 155 | 3.66E-16 | IPR036273 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 821 | 1054 | 2.98E-29 | IPR011047 |
| SUPERFAMILY | SSF52087 | CRAL/TRIO domain | 158 | 355 | 4.71E-56 | IPR036865 |
| Gene3D | G3DSA:1.10.8.20 | - | 39 | 146 | 1.8E-12 | - |
| Gene3D | G3DSA:3.40.525.10 | - | 147 | 358 | 7.4E-72 | IPR036865 |
| Gene3D | G3DSA:2.130.10.10 | - | 807 | 1068 | 6.8E-26 | IPR015943 |
| SMART | SM00516 | sec14_4 | 159 | 331 | 5.0E-59 | IPR001251 |
| SMART | SM00320 | WD40_4 | 935 | 974 | 6.2E-5 | IPR001680 |
| SMART | SM01100 | CRAL_TRIO_N_2 | 114 | 139 | 2.2E-5 | IPR011074 |
| SMART | SM00320 | WD40_4 | 978 | 1017 | 2.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 942 | 977 | 9.836508 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 942 | 983 | 11.978851 | IPR001680 |
| ProSiteProfiles | PS50191 | CRAL-TRIO lipid binding domain profile. | 159 | 334 | 24.919825 | IPR001251 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 384 | 401 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 492 | 513 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 384 | 440 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G55690.3 | Sec14p-like phosphatidylinositol transfer family protein. | 0 |
| RefSeq | XP_009147486.1 | phosphatidylinositol/phosphatidylcholine transfer protein SFH13 isoform X2 [Brassica rapa] | 0 |
| Q501H5 | Phosphatidylinositol/phosphatidylcholine transfer protein SFH13 OS=Arabidopsis thaliana OX=3702 GN=SFH13 PE=2 SV=1 | 0 | |
| TrEMBL | M4FA98 | CRAL-TRIO domain-containing protein OS=Brassica rapa subsp. pekinensis OX=51351 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology