Basic Information
Locus ID:
BniB04g049530.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B4 | 30888543 | 30892658 | + | BniB04g049530.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.45 | 107,032.17 Da | 49.05 | 76.52 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02674 | Peptidase_C19R | 774 | 941 | 5.31115E-56 | - |
| Pfam | PF06337 | DUSP domain | 109 | 200 | 2.3E-23 | IPR006615 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 365 | 940 | 1.6E-84 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 363 | 943 | 5.3E-112 | IPR038765 |
| SUPERFAMILY | SSF143791 | DUSP-like | 81 | 200 | 3.92E-30 | IPR035927 |
| Gene3D | G3DSA:3.30.2230.10 | - | 75 | 213 | 1.7E-35 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 353 | 566 | 8.1E-70 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 689 | 951 | 4.4E-59 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 214 | 299 | 1.6E-8 | - |
| SMART | SM00695 | dusp | 104 | 203 | 1.3E-39 | IPR006615 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 365 | 943 | 58.957787 | IPR028889 |
| ProSiteProfiles | PS51283 | DUSP domain profile. | 85 | 200 | 19.026834 | IPR006615 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 366 | 381 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 885 | 902 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 690 | 713 | - | - |
| Coils | Coil | Coil | 87 | 107 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G32850.1 | ubiquitin-specific protease 11. | 0 |
| RefSeq | XP_013671829.1 | putative ubiquitin carboxyl-terminal hydrolase 11 isoform X1 [Brassica napus] | 0 |
| Q9MAQ3 | Putative ubiquitin carboxyl-terminal hydrolase 11 OS=Arabidopsis thaliana OX=3702 GN=UBP11 PE=3 SV=2 | 0 | |
| TrEMBL | A0A8S9HCC6 | Ubiquitin carboxyl-terminal hydrolase OS=Brassica cretica OX=69181 GN=F2Q68_00014549 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology