Basic Information
Locus ID:
BniB04g048720.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B4 | 29811300 | 29812148 | + | BniB04g048720.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.53 | 32,590.32 Da | 54.57 | 72.87 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 103 | 146 | 1.35315E-15 | - |
| Pfam | PF13639 | Ring finger domain | 102 | 146 | 1.9E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 103 | 152 | 3.85E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 70 | 151 | 2.9E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 104 | 145 | 2.4E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 104 | 146 | 12.1057 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G32361.1 | RING/U-box superfamily protein. Putative RING-H2 finger protein ATL1F precursor. | 0 |
| RefSeq | XP_018510221.1 | RING-H2 finger protein ATL81 [Brassica rapa] | 0 |
| Q9LQM2 | RING-H2 finger protein ATL81 OS=Arabidopsis thaliana OX=3702 GN=ATL81 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X7SBB3 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_032919 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G32361.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10009642m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g28520.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB04g048720.2N |