halophFGD

Basic Information

Locus ID: BniB04g048250.2N

Species & Taxonomic ID: Brassica nigra & 3710

Genome Assembly: N100

Description: F-box protein At1g67390

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
B4	29067158	29070359	-	BniB04g048250.2N

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.50	43,422.87 Da	43.23	97.47	-0.28

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
SUPERFAMILY	SSF52047	RNI-like	67	196	9.42E-8	-
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	1	224	2.6E-6	IPR032675
MobiDBLite	mobidb-lite	consensus disorder prediction	351	376	-	-
Coils	Coil	Coil	308	328	-	-

Best hit

Source	Best Hit ID	Description	E-value
TAIR	AT3G60790.1	F-box family protein.	0
RefSeq	XP_048620828.1	LOW QUALITY PROTEIN: F-box protein At3g60790 [Brassica napus]	0
Swiss-Prot	Q9LZY4	F-box protein At3g60790 OS=Arabidopsis thaliana OX=3702 GN=At3g60790 PE=2 SV=3	0
TrEMBL	A0A8X7V5W0	Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_033226 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Brassicaceae	Arabidopsis thaliana	6	AT1G67390.1, AT1G78470.1, AT1G80960.2, AT3G43410.1 ... AT3G60790.1, AT5G35945.1
Brassicaceae	Eutrema salsugineum	15	Thhalv10002355m.g.v1.0, Thhalv10002356m.g.v1.0 ... Thhalv10009850m.g.v1.0, Thhalv10019621m.g.v1.0, Thhalv10022453m.g.v1.0, Thhalv10022454m.g.v1.0, Thhalv10026859m.g.v1.0, Thhalv10026887m.g.v1.0, Thhalv10026901m.g.v1.0, Thhalv10027156m.g.v1.0, Thhalv10027212m.g.v1.0, Thhalv10027314m.g.v1.0, Thhalv10027373m.g.v1.0, Thhalv10027448m.g.v1.0, Thhalv10027541m.g.v1.0
Brassicaceae	Schrenkiella parvula	6	Sp1g05910.v2.2, Sp2g01400.v2.2, Sp4g04880.v2.2 ... Sp5g02460.v2.2, Sp5g33570.v2.2, Sp7g13290.v2.2
Brassicaceae	Brassica nigra	25	BniB01g033320.2N, BniB02g037670.2N, BniB03g057940.2N ... BniB03g057970.2N, BniB03g057980.2N, BniB03g058040.2N, BniB03g058050.2N, BniB03g058070.2N, BniB03g060250.2N, BniB04g048250.2N, BniB04g050140.2N, BniB04g054130.2N, BniB05g062410.2N, BniB05g074460.2N, BniB06g043570.2N, BniB06g046000.2N, BniB06g051180.2N, BniB06g062370.2N, BniB07g016100.2N, BniB07g016120.2N, BniB08g052270.2N, BniB08g075070.2N, BniB08g075090.2N, BniB08g075100.2N, BniS00612g170.2N
Posidoniaceae	Posidonia oceanica	1	gene.Posoc02g28740
Tamaricaceae	Reaumuria soongarica	1	STRG.3233_chr01_+