Basic Information
Locus ID:
BniB04g048010.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
F-box associated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B4 | 28277533 | 28278596 | + | BniB04g048010.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.25 | 34,756.94 Da | 39.85 | 95.76 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 6 | 39 | 1.2E-7 | IPR001810 |
| Pfam | PF07734 | F-box associated | 145 | 296 | 5.3E-32 | IPR006527 |
| SUPERFAMILY | SSF81383 | F-box domain | 6 | 66 | 3.27E-14 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 2 | 46 | 3.8E-8 | - |
| SMART | SM00256 | fbox_2 | 7 | 47 | 6.1E-9 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 106 | 285 | 2.4E-31 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 1 | 47 | 10.954661 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G32430.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_018467632.1 | PREDICTED: putative F-box/kelch-repeat protein At1g32430 [Raphanus sativus] | 0 |
| Q9LQL4 | Putative F-box/kelch-repeat protein At1g32430 OS=Arabidopsis thaliana OX=3702 GN=At1g32430 PE=4 SV=2 | 0 | |
| TrEMBL | A0A6J0M5K6 | putative F-box/kelch-repeat protein At1g32430 OS=Raphanus sativus OX=3726 GN=LOC108839353 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 22 | AT1G12170.1, AT1G12190.1, AT1G32430.1, AT1G47390.1 ... |
| Brassicaceae | Eutrema salsugineum | 17 | Thhalv10002898m.g.v1.0, Thhalv10006465m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g27690.v2.2, Sp5g16370.v2.2 |
| Brassicaceae | Brassica nigra | 23 | BniB01g008560.2N, BniB01g010040.2N, BniB01g047060.2N ... |