halophFGD

Basic Information

Locus ID: BniB04g047280.2N

Species & Taxonomic ID: Brassica nigra & 3710

Genome Assembly: N100

Description: Belongs to the peptidase A1 family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
B4	27567133	27568474	-	BniB04g047280.2N

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.74	45,890.98 Da	37.18	75.19	-0.15

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd05476	pepsin_A_like_plant	84	427	5.68845E-76	IPR034161
Pfam	PF14543	Xylanase inhibitor N-terminal	85	260	3.8E-57	IPR032861
Pfam	PF14541	Xylanase inhibitor C-terminal	288	423	5.2E-18	IPR032799
SUPERFAMILY	SSF50630	Acid proteases	77	427	8.16E-86	IPR021109
Gene3D	G3DSA:2.40.70.10	Acid Proteases	262	431	1.1E-34	IPR021109
Gene3D	G3DSA:2.40.70.10	Acid Proteases	61	260	1.7E-56	IPR021109
ProSiteProfiles	PS51767	Peptidase family A1 domain profile.	85	423	38.195927	IPR033121
ProSitePatterns	PS00141	Eukaryotic and viral aspartyl proteases active site.	100	111	-	IPR001969

Gene Ontology

Biological Process:

GO:0006508 (proteolysis)

Molecular Function:

GO:0004190 (aspartic-type endopeptidase activity)

KEGG Pathway

KO Term:

K01379 (cathepsin D [EC:3.4.23.5])

Pathway:

ko04071 (Sphingolipid signaling pathway) map04071 (Sphingolipid signaling pathway) ko04140 (Autophagy - animal) map04140 (Autophagy - animal) map04210 (Apoptosis)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G31450.1	Eukaryotic aspartyl protease family protein.
RefSeq	XP_018459283.1	PREDICTED: probable aspartic protease At2g35615 [Raphanus sativus]
Swiss-Prot	Q3EBM5	Probable aspartic protease At2g35615 OS=Arabidopsis thaliana OX=3702 GN=At2g35615 PE=3 SV=1
TrEMBL	A0A8X7SDR8	Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_032803 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	19	jg12642, jg12735, jg1685, jg22786, jg22906, jg23673, jg25370 ... jg25943, jg25944, jg29095, jg29100, jg29786, jg37531, jg38459, jg7746, jg7747, jg7749, jg7753, jg7759
Aizoaceae	Mesembryanthemum crystallinum	3	gene_17003, gene_1816, gene_25933
Amaranthaceae	Atriplex hortensis	6	Ah013525, Ah013526, Ah035318, Ah035319, Ah035320, Ah035712
Amaranthaceae	Beta vulgaris	7	BVRB_2g023750, BVRB_2g029270, BVRB_6g149220, BVRB_6g149230 ... BVRB_6g149240, BVRB_6g149250, BVRB_6g149260
Amaranthaceae	Salicornia bigelovii	11	Sbi_jg21426, Sbi_jg21563, Sbi_jg21756, Sbi_jg22061 ... Sbi_jg22256, Sbi_jg22426, Sbi_jg39326, Sbi_jg39327, Sbi_jg42275, Sbi_jg44863, Sbi_jg54658
Amaranthaceae	Salicornia europaea	6	Seu_jg11167, Seu_jg11168, Seu_jg15988, Seu_jg16184 ... Seu_jg16308, Seu_jg27264
Amaranthaceae	Suaeda aralocaspica	7	GOSA_00002376, GOSA_00002377, GOSA_00002380, GOSA_00002381 ... GOSA_00008609, GOSA_00013368, GOSA_00016453
Amaranthaceae	Suaeda glauca	12	Sgl35391, Sgl35393, Sgl35395, Sgl35397, Sgl40766, Sgl40768 ... Sgl40770, Sgl40772, Sgl62862, Sgl63005, Sgl67475, Sgl67632
Amaranthaceae	Chenopodium album	20	gene:ENSEOMG00000000291, gene:ENSEOMG00000001569 ... gene:ENSEOMG00000001720, gene:ENSEOMG00000002383, gene:ENSEOMG00000003231, gene:ENSEOMG00000003694, gene:ENSEOMG00000012519, gene:ENSEOMG00000013841, gene:ENSEOMG00000013875, gene:ENSEOMG00000014179, gene:ENSEOMG00000016204, gene:ENSEOMG00000017532, gene:ENSEOMG00000020075, gene:ENSEOMG00000024873, gene:ENSEOMG00000026157, gene:ENSEOMG00000026312, gene:ENSEOMG00000026464, gene:ENSEOMG00000026603, gene:ENSEOMG00000027149, gene:ENSEOMG00000049381
Amaranthaceae	Chenopodium quinoa	15	CQ.Regalona.r1.1BG0019830, CQ.Regalona.r1.2AG0017010 ... CQ.Regalona.r1.2AG0021580, CQ.Regalona.r1.2BG0018790, CQ.Regalona.r1.6AG0005780, CQ.Regalona.r1.6AG0005800, CQ.Regalona.r1.6AG0005810, CQ.Regalona.r1.6AG0005820, CQ.Regalona.r1.6AG0005850, CQ.Regalona.r1.6BG0006060, CQ.Regalona.r1.6BG0006070, CQ.Regalona.r1.6BG0006090, CQ.Regalona.r1.6BG0006100, CQ.Regalona.r1.6BG0006120, CQ.Regalona.r1.6BG0006130
Anacardiaceae	Pistacia vera	3	pistato.v30020990, pistato.v30136540, pistato.v30238610
Apiaceae	Apium graveolens	6	Ag6G01775, Ag6G01776, Ag6G01912, Ag6G01913, Ag6G01914 ... AgUnG00642
Arecaceae	Cocos nucifera	4	COCNU_04G009270, COCNU_07G015580, COCNU_07G015590 ... scaffold001489G000040
Arecaceae	Phoenix dactylifera	2	gene-LOC103720458, gene-LOC120104501
Asparagaceae	Asparagus officinalis	2	AsparagusV1_09.321.V1.1, AsparagusV1_10.47.V1.1
Asteraceae	Flaveria trinervia	4	Ftri11G26410, Ftri12G22009, Ftri16G18238, Ftri16G28894
Brassicaceae	Arabidopsis thaliana	8	AT1G31450.1, AT1G64830.1, AT2G28010.1, AT2G28030.1 ... AT2G28040.1, AT2G28220.1, AT2G35615.1, AT5G33340.1
Brassicaceae	Eutrema salsugineum	11	Thhalv10002859m.g.v1.0, Thhalv10003479m.g.v1.0 ... Thhalv10009809m.g.v1.0, Thhalv10012077m.g.v1.0, Thhalv10017578m.g.v1.0, Thhalv10017686m.g.v1.0, Thhalv10017839m.g.v1.0, Thhalv10017843m.g.v1.0, Thhalv10017848m.g.v1.0, Thhalv10017850m.g.v1.0, Thhalv10017857m.g.v1.0
Brassicaceae	Schrenkiella parvula	9	Sp1g27250.v2.2, Sp4g11030.v2.2, Sp4g11310.v2.2 ... Sp4g17850.v2.2, Sp5g17010.v2.2, Sp5g18810.v2.2, Sp7g07600.v2.2, SpUn0582_0010.v2.2, SpUn0582_0020.v2.2
Brassicaceae	Brassica nigra	11	BniB01g008970.2N, BniB01g015490.2N, BniB01g015710.2N ... BniB01g054290.2N, BniB01g061300.2N, BniB04g047280.2N, BniB06g008340.2N, BniB07g018380.2N, BniB07g018390.2N, BniB08g022320.2N, BniB08g040150.2N
Casuarinaceae	Casuarina equisetifolia	6	Ceq01G0720, Ceq05G0091, Ceq05G0093, Ceq05G0094, Ceq05G0179 ... Ceq09G1946
Casuarinaceae	Casuarina glauca	5	Cgl01G0894, Cgl05G0084, Cgl05G0090, Cgl05G0189, Cgl09G2130
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno18g04860
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate09g03950, gene.Thate09g03960, gene.Thate09g03970
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-1144
Nitrariaceae	Nitraria sibirica	6	evm.TU.LG02.834, evm.TU.LG02.835, evm.TU.LG03.1904 ... evm.TU.LG03.1905, evm.TU.LG03.1906, evm.TU.LG03.1907
Plantaginaceae	Plantago ovata	8	Pov_00003700, Pov_00025862, Pov_00030812, Pov_00030828 ... Pov_00030835, Pov_00031185, Pov_00031186, Pov_00032459
Plumbaginaceae	Limonium bicolor	1	Lb1G01678
Poaceae	Echinochloa crus-galli	3	AH02.436, BH02.453, CH02.500
Poaceae	Eleusine coracana subsp. coracana	2	gene-QOZ80_1AG0012000, gene-QOZ80_1BG0060580
Poaceae	Hordeum vulgare	11	HORVU.MOREX.r3.3HG0234840.1.CDS1 ... HORVU.MOREX.r3.3HG0239700.1.CDS1, HORVU.MOREX.r3.3HG0239710.1.CDS1, HORVU.MOREX.r3.3HG0239720.1.CDS1, HORVU.MOREX.r3.3HG0239740.1.CDS1, HORVU.MOREX.r3.3HG0239750.1.CDS1, HORVU.MOREX.r3.3HG0239770.1.CDS1, HORVU.MOREX.r3.3HG0239790.1.CDS1, HORVU.MOREX.r3.3HG0239800.1.CDS1, HORVU.MOREX.r3.3HG0239860.1.CDS1, HORVU.MOREX.r3.7HG0648780.1.CDS1
Poaceae	Lolium multiflorum	8	gene-QYE76_050233, gene-QYE76_050415, gene-QYE76_050419 ... gene-QYE76_050421, gene-QYE76_050423, gene-QYE76_050428, gene-QYE76_050453, gene-QYE76_054811
Poaceae	Oryza coarctata	2	Oco01G003290, Oco02G003310
Poaceae	Oryza sativa	2	LOC_Os01g08330.1, LOC_Os07g34250.1
Poaceae	Paspalum vaginatum	1	gene-BS78_03G041900
Poaceae	Puccinellia tenuiflora	6	Pt_Chr0200034, Pt_Chr0200040, Pt_Chr0200196, Pt_Chr0200275 ... Pt_Chr0200279, Pt_Chr0200280
Poaceae	Sporobolus alterniflorus	7	Chr02G020160, Chr03G005590, Chr03G005600, Chr03G005610 ... Chr05G011020, Chr08G006080, Chr08G006110
Poaceae	Thinopyrum elongatum	10	Tel3E01G207200, Tel3E01G207300, Tel3E01G207500 ... Tel3E01G208200, Tel3E01G208300, Tel3E01G208400, Tel3E01G208800, Tel3E01G208900, Tel7E01G186300, Tel7E01G186500
Poaceae	Triticum dicoccoides	3	gene_TRIDC3AG015110, gene_TRIDC3BG019680 ... gene_TRIDC3BG019690
Poaceae	Triticum aestivum	31	TraesCS3A02G098400.1.cds1, TraesCS3A02G120400.1.cds1 ... TraesCS3A02G120500.1.cds1, TraesCS3A02G120600.1, TraesCS3A02G120700.1.cds1, TraesCS3A02G121000.1.cds1, TraesCS3A02G121100.1, TraesCS3A02G121200.1.cds1, TraesCS3B02G114000.1, TraesCS3B02G139800.1.cds1, TraesCS3B02G139900.1.cds1, TraesCS3B02G140000.1.cds1, TraesCS3B02G140100.1.cds1, TraesCS3B02G140200.1.cds1, TraesCS3B02G140500.1.cds1, TraesCS3B02G140600.1.cds1, TraesCS3D02G098800.1, TraesCS3D02G122400.1, TraesCS3D02G122500.1.cds1, TraesCS3D02G122600.1.cds1, TraesCS3D02G122700.1.cds1, TraesCS3D02G122800.1.cds1, TraesCS3D02G122900.1, TraesCS3D02G123000.1.cds1, TraesCS3D02G123300.1.cds1, TraesCS4A02G387500.1.cds1, TraesCS4A02G387600.1.cds1, TraesCS7A02G088300.1.cds1, TraesCS7A02G088400.1, TraesCS7B02G437500.1.cds1, TraesCS7D02G083600.1.cds1
Poaceae	Zea mays	1	Zm00001eb190090_P001
Poaceae	Zoysia japonica	2	nbis-gene-13200, nbis-gene-6796
Poaceae	Zoysia macrostachya	1	Zma_g7725
Portulacaceae	Portulaca oleracea	14	evm.TU.LG02.576, evm.TU.LG02.577, evm.TU.LG03.2164 ... evm.TU.LG09.2097, evm.TU.LG10.992, evm.TU.LG13.238, evm.TU.LG13.239, evm.TU.LG13.241, evm.TU.LG13.242, evm.TU.LG13.243, evm.TU.LG14.452, evm.TU.LG17.993, evm.TU.LG17.994, evm.TU.LG17.996
Posidoniaceae	Posidonia oceanica	7	gene.Posoc06g06270, gene.Posoc07g02170, gene.Posoc07g02190 ... gene.Posoc07g02210, gene.Posoc07g02230, gene.Posoc07g02310, gene.Posoc07g04050
Rhizophoraceae	Bruguiera sexangula	6	evm.TU.Scaffold_1_RagTag.479, evm.TU.Scaffold_1_RagTag.480 ... evm.TU.Scaffold_1_RagTag.481, evm.TU.Scaffold_1_RagTag.495, evm.TU.Scaffold_1_RagTag.496, evm.TU.Scaffold_5_RagTag.45
Rhizophoraceae	Carallia pectinifolia	12	nbisL1-mrna-10439, nbisL1-mrna-10441, nbisL1-mrna-19524 ... nbisL1-mrna-3052, nbisL1-mrna-3119, nbisL1-mrna-7667, nbisL1-mrna-7668, nbisL1-mrna-7669, nbisL1-mrna-7670, nbisL1-mrna-7688, nbisL1-mrna-7689, nbisL1-mrna-7690
Rhizophoraceae	Ceriops tagal	7	nbisL1-mrna-11316, nbisL1-mrna-16010, nbisL1-mrna-16011 ... nbisL1-mrna-16012, nbisL1-mrna-16026, nbisL1-mrna-9205, nbisL1-mrna-9206
Rhizophoraceae	Ceriops zippeliana	6	nbisL1-mrna-10714, nbisL1-mrna-10715, nbisL1-mrna-5509 ... nbisL1-mrna-5510, nbisL1-mrna-5525, nbisL1-mrna-5526
Rhizophoraceae	Kandelia candel	6	add.evm.TU.utg000006l.10, add.evm.TU.utg000006l.8 ... add.evm.TU.utg000012l.106, add.evm.TU.utg000012l.107, add.evm.TU.utg000012l.114, add.evm.TU.utg000012l.115
Rhizophoraceae	Kandelia obovata	4	Maker00010882, Maker00013220, Maker00013564, Maker00013798
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-20121, nbisL1-mrna-20123, nbisL1-mrna-20125
Rhizophoraceae	Rhizophora mangle	4	nbisL1-mrna-625, nbisL1-mrna-639, nbisL1-mrna-6871 ... nbisL1-mrna-6872
Salicaceae	Populus euphratica	7	populus_peu08023, populus_peu08036, populus_peu27407 ... populus_peu31397, populus_peu33994, populus_peu34164, populus_peu38169
Solanaceae	Lycium barbarum	10	gene-LOC132599898, gene-LOC132599899, gene-LOC132612234 ... gene-LOC132612261, gene-LOC132612321, gene-LOC132612338, gene-LOC132612339, gene-LOC132612340, gene-LOC132612341, gene-LOC132638264
Solanaceae	Solanum chilense	9	SOLCI003061700, SOLCI003061800, SOLCI003061900 ... SOLCI005775600, SOLCI005775700, SOLCI005775800, SOLCI005775900, SOLCI005833200, SOLCI005833400
Solanaceae	Solanum pennellii	11	gene-LOC107024833, gene-LOC107026537, gene-LOC107027354 ... gene-LOC107028096, gene-LOC107028198, gene-LOC107028263, gene-LOC107028267, gene-LOC107028270, gene-LOC107028292, gene-LOC107028312, gene-LOC114075565
Tamaricaceae	Reaumuria soongarica	7	gene_10875, gene_13901, gene_13959, gene_13960, gene_13961 ... gene_13962, gene_3743
Tamaricaceae	Tamarix chinensis	2	TC02G2796, TC02G2798
Zosteraceae	Zostera marina	5	Zosma04g04960.v3.1, Zosma04g04970.v3.1, Zosma04g04980.v3.1 ... Zosma06g02050.v3.1, Zosma06g21920.v3.1