halophFGD

Basic Information

Locus ID: BniB04g047270.2N

Species & Taxonomic ID: Brassica nigra & 3710

Genome Assembly: N100

Description: Arginine and glutamate-rich 1

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
B4	27561385	27562602	-	BniB04g047270.2N

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.22	47,029.16 Da	37.96	78.94	-0.34

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00646	F-box domain	3	40	1.1E-5	IPR001810
Pfam	PF07734	F-box associated	193	368	1.4E-43	IPR006527
SUPERFAMILY	SSF50965	Galactose oxidase, central domain	23	276	1.09E-7	IPR011043
SUPERFAMILY	SSF81383	F-box domain	3	68	9.55E-10	IPR036047
TIGRFAM	TIGR01640	F_box_assoc_1: F-box protein interaction domain	93	318	3.0E-41	IPR017451

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K13173 (arginine and glutamate-rich protein 1)

Best hit

Source	Best Hit ID	Description	E-value
TAIR	AT3G19880.1	F-box and associated interaction domains-containing protein.	0
RefSeq	XP_018465849.1	PREDICTED: putative F-box protein At1g32140 [Raphanus sativus]	0
Swiss-Prot	Q9LT21	F-box protein At3g19880 OS=Arabidopsis thaliana OX=3702 GN=At3g19880 PE=2 SV=1	0
TrEMBL	A0A8X7SD31	Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_032802 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Brassicaceae	Arabidopsis thaliana	24	AT1G24800.1, AT1G24881.1, AT1G25055.1, AT1G25150.1 ... AT1G25211.1, AT1G32140.1, AT1G54550.1, AT1G59680.1, AT1G66490.1, AT1G67450.1, AT1G67455.1, AT2G33655.1, AT3G13680.1, AT3G13820.1, AT3G14030.1, AT3G19880.1, AT3G19890.1, AT3G20030.1, AT3G20400.1, AT3G49510.1, AT3G49520.1, AT4G05080.1, AT4G17200.1, AT5G60560.1
Brassicaceae	Eutrema salsugineum	15	Thhalv10000447m.g.v1.0, Thhalv10002786m.g.v1.0 ... Thhalv10003097m.g.v1.0, Thhalv10009753m.g.v1.0, Thhalv10009944m.g.v1.0, Thhalv10015452m.g.v1.0, Thhalv10019643m.g.v1.0, Thhalv10022026m.g.v1.0, Thhalv10022402m.g.v1.0, Thhalv10023084m.g.v1.0, Thhalv10023095m.g.v1.0, Thhalv10023820m.g.v1.0, Thhalv10023848m.g.v1.0, Thhalv10024142m.g.v1.0, Thhalv10027178m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp3g11150.v2.2, Sp3g32750.v2.2
Brassicaceae	Brassica nigra	13	BniB01g039260.2N, BniB02g015480.2N, BniB04g007550.2N ... BniB04g047270.2N, BniB05g002470.2N, BniB05g017590.2N, BniB06g018860.2N, BniB06g051530.2N, BniB07g030840.2N, BniB07g031550.2N, BniB07g055480.2N, BniB08g028340.2N, BniB08g067670.2N