Basic Information
Locus ID:
BniB04g047160.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
cellular macromolecule catabolic process
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B4 | 27432793 | 27433060 | - | BniB04g047160.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.88 | 6,380.48 Da | 42.36 | 119.48 | 0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00240 | Ubiquitin family | 20 | 51 | 2.6E-10 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 20 | 54 | 2.99E-11 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 18 | 56 | 2.1E-13 | - |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 20 | 53 | 12.835808 | IPR000626 |
| PRINTS | PR00348 | Ubiquitin signature | 9 | 29 | 1.3E-5 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 30 | 51 | 1.3E-5 | IPR019956 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G31340.1 | related to ubiquitin 1. Encodes a ubiquitin-related protein that is conjugated to target proteins by neddylation. It has been shown to be conjugated to the cullin AtCUL1. The RUB-conjugation pathway has been implicated in in auxin response. | 0 |
| RefSeq | XP_018462539.1 | PREDICTED: ubiquitin-NEDD8-like protein RUB2 [Raphanus sativus] | 0 |
| Q9SHE7 | Ubiquitin-NEDD8-like protein RUB1 OS=Arabidopsis thaliana OX=3702 GN=RUB1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A8X7SBQ5 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_032795 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10027057m.g.v1.0 |
| Brassicaceae | Brassica nigra | 2 | BniB04g047160.2N, BniB08g027520.2N |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_021054 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6BG024370, gene_TRIDC7BG056460 |