Basic Information
Locus ID:
BniB04g045960.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B4 | 26226163 | 26228524 | + | BniB04g045960.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.44 | 72,794.44 Da | 48.30 | 81.41 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18312 | BTB_POZ_NPY3-like | 19 | 124 | 4.68879E-46 | - |
| Pfam | PF00651 | BTB/POZ domain | 27 | 115 | 2.5E-6 | IPR000210 |
| Pfam | PF03000 | NPH3 family | 216 | 486 | 4.7E-90 | IPR027356 |
| SUPERFAMILY | SSF54695 | POZ domain | 16 | 116 | 2.98E-16 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 8 | 138 | 2.2E-11 | IPR011333 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 28 | 99 | 10.985188 | IPR000210 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 216 | 510 | 89.553619 | IPR027356 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 262 | 281 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 620 | 660 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G30440.1 | Phototropic-responsive NPH3 family protein. | 0 |
| RefSeq | XP_018488918.1 | PREDICTED: BTB/POZ domain-containing protein At1g30440 [Raphanus sativus] | 0 |
| Q9S9Q9 | BTB/POZ domain-containing protein At1g30440 OS=Arabidopsis thaliana OX=3702 GN=At1g30440 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8X7SCU2 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_032652 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology