Basic Information
Locus ID:
BniB04g040620.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
No apical meristem (NAM) protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B4 | 22185992 | 22188429 | + | BniB04g040620.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.85 | 59,634.12 Da | 41.51 | 66.88 | -0.79 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02365 | No apical meristem (NAM) protein | 119 | 252 | 5.6E-18 | IPR003441 |
| SUPERFAMILY | SSF101941 | NAC domain | 103 | 271 | 1.23E-36 | IPR036093 |
| Gene3D | G3DSA:2.170.150.80 | NAC domain | 127 | 275 | 2.6E-28 | IPR036093 |
| ProSiteProfiles | PS51005 | NAC domain profile. | 118 | 271 | 30.831327 | IPR003441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 403 | 421 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 361 | 428 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 361 | 394 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G25580.1 | NAC (No Apical Meristem) domain transcriptional regulator superfamily protein. Encodes suppressor of gamma response 1 (SOG1), a putative transcription factor governing multiple responses to DNA damage. | 0 |
| RefSeq | XP_013642093.1 | SUPPRESSOR OF GAMMA RESPONSE 1 [Brassica napus] | 0 |
| Q6NQK2 | SUPPRESSOR OF GAMMA RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=SOG1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A078FUR5 | (rape) hypothetical protein OS=Brassica napus OX=3708 GN=BnaA09g28720D PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology