Basic Information
Locus ID:
BniB04g040170.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
eukaryotic translation initiation factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B4 | 21944702 | 21945777 | - | BniB04g040170.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.56 | 17,098.03 Da | 42.34 | 76.54 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04468 | S1_eIF5A | 85 | 154 | 3.51582E-30 | - |
| Pfam | PF01287 | Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold | 84 | 153 | 5.2E-28 | IPR020189 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 85 | 155 | 1.14E-23 | IPR012340 |
| SUPERFAMILY | SSF50104 | Translation proteins SH3-like domain | 14 | 92 | 3.96E-28 | IPR008991 |
| Gene3D | G3DSA:2.30.30.30 | - | 1 | 84 | 1.1E-43 | IPR014722 |
| Gene3D | G3DSA:2.40.50.140 | - | 85 | 159 | 1.8E-32 | - |
| SMART | SM01376 | eIF_5a_2 | 84 | 153 | 1.4E-30 | IPR020189 |
| TIGRFAM | TIGR00037 | eIF_5A: translation elongation factor IF5A | 16 | 152 | 2.3E-40 | IPR001884 |
| PIRSF | PIRSF003025 | Transl_init_eIF5A | 1 | 156 | 1.2E-65 | IPR001884 |
| ProSitePatterns | PS00302 | Eukaryotic initiation factor 5A hypusine signature. | 49 | 56 | - | IPR019769 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G26630.1 | Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein. Eukaryotic translation initiation factor 5A-2. Involved in programmed cell death triggered as a response to pseudomonas syringae infection. Loss of function mutants are more resistant to infection. | 0 |
| RefSeq | XP_013597862.1 | PREDICTED: eukaryotic translation initiation factor 5A-2-like isoform X2 [Brassica oleracea var. oleracea] | 0 |
| Q93VP3 | Eukaryotic translation initiation factor 5A-2 OS=Arabidopsis thaliana OX=3702 GN=ELF5A-2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A397YDI3 | Eukaryotic translation initiation factor 5A OS=Brassica campestris OX=3711 GN=BRAA08T34685Z PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology