Basic Information
Locus ID:
BniB04g039190.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
RING-H2 finger protein ATL47-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B4 | 21152146 | 21153252 | - | BniB04g039190.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.08 | 40,300.00 Da | 46.54 | 78.15 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 129 | 172 | 4.08696E-19 | - |
| Pfam | PF13639 | Ring finger domain | 129 | 172 | 1.0E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 109 | 178 | 3.53E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 90 | 177 | 1.8E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 130 | 171 | 1.5E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 130 | 172 | 12.223724 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G23980.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_013662842.1 | RING-H2 finger protein ATL47 [Brassica napus] | 0 |
| Q8GW38 | RING-H2 finger protein ATL47 OS=Arabidopsis thaliana OX=3702 GN=ATL47 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X7SE17 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_032366 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology