Basic Information
Locus ID:
BniB04g038010.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Receptor homology region, transmembrane domain- and RING domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B4 | 20341217 | 20342752 | + | BniB04g038010.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.18 | 47,086.16 Da | 63.07 | 77.74 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 230 | 273 | 5.43E-21 | - |
| CDD | cd02123 | PA_C_RZF_like | 13 | 162 | 8.40427E-48 | IPR044744 |
| Pfam | PF02225 | PA domain | 60 | 142 | 1.2E-6 | IPR003137 |
| Pfam | PF13639 | Ring finger domain | 230 | 273 | 8.5E-12 | IPR001841 |
| SUPERFAMILY | SSF52025 | PA domain | 76 | 143 | 1.26E-5 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 216 | 280 | 3.24E-17 | - |
| Gene3D | G3DSA:3.50.30.30 | - | 23 | 158 | 3.3E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 190 | 278 | 1.2E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 231 | 272 | 1.4E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 231 | 273 | 12.061441 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G22670.1 | Protease-associated (PA) RING/U-box zinc finger family protein. | 0 |
| RefSeq | XP_009115614.1 | receptor homology region, transmembrane domain- and RING domain-containing protein 3 [Brassica rapa] | 0 |
| F4I2Y3 | Receptor homology region, transmembrane domain- and RING domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=RMR3 PE=3 SV=1 | 0 | |
| TrEMBL | A0A397XZ50 | RING-type domain-containing protein OS=Brassica campestris OX=3711 GN=BRARA_I03298 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology