Basic Information
Locus ID:
BniB04g037930.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B4 | 20282659 | 20283228 | + | BniB04g037930.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.65 | 21,664.35 Da | 55.22 | 88.20 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 142 | 185 | 3.8E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 134 | 187 | 5.52E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 112 | 188 | 1.1E-15 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 144 | 185 | 12.445019 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G60080.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_048613374.1 | uncharacterized protein LOC125587211 [Brassica napus] | 0 |
| Q9BV68 | E3 ubiquitin-protein ligase RNF126 OS=Homo sapiens OX=9606 GN=RNF126 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8X7W6R6 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_007732 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10002215m.g.v1.0 |
| Brassicaceae | Brassica nigra | 24 | BniB01g016270.2N, BniB01g039860.2N, BniB01g039880.2N ... |