halophFGD

Basic Information

Locus ID: BniB04g036870.2N

Species & Taxonomic ID: Brassica nigra & 3710

Genome Assembly: N100

Description: Interconversion of serine and glycine

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
B4	19648488	19649583	+	BniB04g036870.2N

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.96	15,239.20 Da	56.55	59.10	-0.69

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
SUPERFAMILY	SSF53383	PLP-dependent transferases	29	124	8.12E-8	IPR015424

KEGG Pathway

KO Term:

K00600 (glycine hydroxymethyltransferase [EC:2.1.2.1])

Pathway:

ko00260 (Glycine, serine and threonine metabolism) map00260 (Glycine, serine and threonine metabolism) ko00460 (Cyanoamino acid metabolism) map00460 (Cyanoamino acid metabolism) ko00630 (Glyoxylate and dicarboxylate metabolism) map00630 (Glyoxylate and dicarboxylate metabolism) ko00670 (One carbon pool by folate) map00670 (One carbon pool by folate) ko00680 (Methane metabolism) map00680 (Methane metabolism) ko01100 (Metabolic pathways) map01100 (Metabolic pathways) ko01110 (Biosynthesis of secondary metabolites) map01110 (Biosynthesis of secondary metabolites) ko01120 (Microbial metabolism in diverse environments) map01120 (Microbial metabolism in diverse environments) ko01200 (Carbon metabolism) map01200 (Carbon metabolism) ko01230 (Biosynthesis of amino acids) map01230 (Biosynthesis of amino acids) ko01523 (Antifolate resistance) map01523 (Antifolate resistance)

Module:

M00140 (C1-unit interconversion, prokaryotes) M00141 (C1-unit interconversion, eukaryotes) M00346 (Formaldehyde assimilation, serine pathway) M00532 (Photorespiration)

Reaction:

R00945 (5,10-Methylenetetrahydrofolate + Glycine + H2O <=> Tetrahydrofolate + L-Serine) R09099 (L-Serine + 5,6,7,8-Tetrahydromethanopterin <=> 5,10-Methylenetetrahydromethanopterin + Glycine + H2O)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G22020.1	serine hydroxymethyltransferase 6. Encodes a putative serine hydroxymethyltransferase.
RefSeq	XP_018438808.1	PREDICTED: serine hydroxymethyltransferase 6 [Raphanus sativus]
Swiss-Prot	Q9LM59	Serine hydroxymethyltransferase 6 OS=Arabidopsis thaliana OX=3702 GN=SHM6 PE=1 SV=1
TrEMBL	A0A6J0JTC3	Serine hydroxymethyltransferase OS=Raphanus sativus OX=3726 GN=LOC108811258 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Amaranthaceae	Chenopodium album	1	gene:ENSEOMG00000000970
Apiaceae	Apium graveolens	1	Ag6G02827
Arecaceae	Cocos nucifera	1	COCNU_01G020030
Brassicaceae	Brassica nigra	5	BniB01g013650.2N, BniB04g036870.2N, BniB06g058710.2N ... BniB06g058720.2N, BniB07g004560.2N
Casuarinaceae	Casuarina glauca	1	Cgl09G0209
Malvaceae	Hibiscus hamabo Siebold & Zucc.	3	nbisL1-mrna-12324, nbisL1-mrna-12360, nbisL1-mrna-1654
Plumbaginaceae	Limonium bicolor	1	Lb3G16609
Poaceae	Puccinellia tenuiflora	1	Pt_Chr0106080
Rhizophoraceae	Kandelia obovata	1	Maker00002798