Basic Information
Locus ID:
BniB04g034420.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
DYW family of nucleic acid deaminases
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B4 | 18267948 | 18273546 | - | BniB04g034420.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.53 | 151,154.84 Da | 32.73 | 78.09 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09612 | Jacalin | 1213 | 1342 | 1.17467E-38 | IPR033734 |
| CDD | cd09612 | Jacalin | 1016 | 1141 | 1.25723E-40 | IPR033734 |
| CDD | cd09612 | Jacalin | 785 | 915 | 3.98352E-51 | IPR033734 |
| Pfam | PF01535 | PPR repeat | 665 | 687 | 0.025 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 121 | 145 | 0.0037 | IPR002885 |
| Pfam | PF13812 | Pentatricopeptide repeat domain | 304 | 354 | 1.6E-4 | IPR002885 |
| Pfam | PF01419 | Jacalin-like lectin domain | 1015 | 1142 | 8.8E-28 | IPR001229 |
| Pfam | PF01419 | Jacalin-like lectin domain | 1210 | 1342 | 4.5E-32 | IPR001229 |
| Pfam | PF01535 | PPR repeat | 147 | 177 | 1.0E-5 | IPR002885 |
| Pfam | PF01419 | Jacalin-like lectin domain | 785 | 914 | 5.3E-33 | IPR001229 |
| Pfam | PF13041 | PPR repeat family | 488 | 536 | 2.7E-10 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 416 | 455 | 5.0E-10 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 588 | 632 | 2.3E-9 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 245 | 292 | 9.7E-14 | IPR002885 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 1003 | 1142 | 2.88E-38 | IPR036404 |
| SUPERFAMILY | SSF81901 | HCP-like | 255 | 514 | 5.75E-9 | - |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 776 | 914 | 5.76E-43 | IPR036404 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 1198 | 1341 | 1.26E-42 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 765 | 914 | 1.6E-54 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 989 | 1142 | 1.8E-45 | IPR036404 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 46 | 215 | 3.7E-30 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 276 | 367 | 3.2E-21 | IPR011990 |
| Gene3D | G3DSA:2.100.10.30 | - | 1193 | 1342 | 1.4E-51 | IPR036404 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 552 | 636 | 2.1E-18 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 637 | 737 | 9.8E-8 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 480 | 550 | 1.4E-8 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 368 | 466 | 3.7E-27 | IPR011990 |
| SMART | SM00915 | Jacalin_2 | 1210 | 1343 | 3.2E-43 | IPR001229 |
| SMART | SM00915 | Jacalin_2 | 1013 | 1144 | 1.3E-37 | IPR001229 |
| SMART | SM00915 | Jacalin_2 | 785 | 916 | 1.8E-45 | IPR001229 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 391 | 418 | 0.0013 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 454 | 483 | 1.3E-8 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 120 | 146 | 0.001 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 318 | 351 | 1.8E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 491 | 523 | 1.0E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 248 | 280 | 2.7E-8 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 419 | 453 | 6.8E-8 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 283 | 316 | 1.9E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 591 | 624 | 3.6E-7 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 147 | 180 | 1.2E-7 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 452 | 486 | 12.539784 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 589 | 623 | 12.561707 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 316 | 350 | 10.906551 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 145 | 179 | 12.002681 | IPR002885 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 1199 | 1343 | 52.071259 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 774 | 916 | 55.353977 | IPR001229 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 281 | 315 | 10.424253 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 417 | 451 | 12.857662 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 246 | 280 | 14.118212 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 488 | 522 | 12.046526 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 386 | 416 | 9.196589 | IPR002885 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 1002 | 1144 | 46.500015 | IPR001229 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 968 | 998 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 968 | 992 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19720.1 | Pentatricopeptide repeat (PPR-like) superfamily protein. | 0 |
| RefSeq | XP_020869006.1 | pentatricopeptide repeat-containing protein At1g19720 isoform X4 [Arabidopsis lyrata subsp. lyrata] | 0 |
| Q9FXH1 | Pentatricopeptide repeat-containing protein At1g19720 OS=Arabidopsis thaliana OX=3702 GN=DYW7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3P6EZF4 | DYW_deaminase domain-containing protein OS=Brassica oleracea OX=3712 GN=BOLC5T30523H PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology