Basic Information
Locus ID:
BniB04g033890.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
zinc-RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B4 | 18019518 | 18020198 | - | BniB04g033890.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.93 | 24,399.22 Da | 45.79 | 65.62 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 21 | 65 | 8.65598E-30 | - |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 22 | 63 | 2.1E-9 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 18 | 76 | 1.38E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 6 | 77 | 6.0E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 23 | 63 | 2.3E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 23 | 64 | 13.551494 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 38 | 47 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 77 | 110 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 82 | 104 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19310.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_009149406.1 | E3 ubiquitin-protein ligase RNF185 [Brassica rapa] | 0 |
| Q09463 | E3 ubiquitin ligase rnf-5 OS=Caenorhabditis elegans OX=6239 GN=rnf-5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7SBM6 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_031964 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology