Basic Information
Locus ID:
BniB04g033870.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Protein DA1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B4 | 18008978 | 18011304 | + | BniB04g033870.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.90 | 59,963.29 Da | 40.68 | 59.14 | -0.67 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09396 | LIM_DA1 | 171 | 223 | 1.06107E-27 | - |
| Pfam | PF12315 | Protein DA1 | 320 | 528 | 4.6E-95 | IPR022087 |
| Pfam | PF00412 | LIM domain | 171 | 224 | 2.9E-8 | IPR001781 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 164 | 196 | 1.62E-8 | - |
| Gene3D | G3DSA:2.10.110.10 | Cysteine Rich Protein | 167 | 244 | 5.4E-12 | - |
| SMART | SM00726 | uim | 67 | 86 | 0.2 | IPR003903 |
| SMART | SM00726 | uim | 99 | 118 | 0.058 | IPR003903 |
| SMART | SM00132 | lim_4 | 170 | 222 | 2.2E-9 | IPR001781 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 67 | 86 | 9.440418 | IPR003903 |
| ProSiteProfiles | PS50023 | LIM domain profile. | 169 | 229 | 11.682099 | IPR001781 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 99 | 118 | 9.368212 | IPR003903 |
| ProSitePatterns | PS00478 | LIM zinc-binding domain signature. | 171 | 205 | - | IPR001781 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 14 | 69 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 36 | 59 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19270.1 | DA1. | 0 |
| RefSeq | XP_013637747.1 | PREDICTED: protein DA1 isoform X2 [Brassica oleracea var. oleracea] | 0 |
| P0C7Q8 | Protein DA1 OS=Arabidopsis thaliana OX=3702 GN=DA1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8S9SAU3 | LIM zinc-binding domain-containing protein OS=Brassica cretica OX=69181 GN=F2Q69_00027104 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology