Basic Information
Locus ID:
BniB04g033650.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Salt stress response/antifungal
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B4 | 17875494 | 17877997 | + | BniB04g033650.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.85 | 60,024.59 Da | 42.02 | 84.12 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 335 | 507 | 3.9E-29 | IPR000719 |
| Pfam | PF01657 | Salt stress response/antifungal | 68 | 125 | 4.9E-9 | IPR002902 |
| Pfam | PF01657 | Salt stress response/antifungal | 154 | 233 | 8.7E-11 | IPR002902 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 331 | 527 | 8.47E-46 | IPR011009 |
| Gene3D | G3DSA:3.30.430.20 | - | 44 | 128 | 8.1E-14 | IPR038408 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 325 | 521 | 4.2E-56 | - |
| Gene3D | G3DSA:3.30.430.20 | - | 143 | 237 | 2.7E-13 | IPR038408 |
| SMART | SM00220 | serkin_6 | 162 | 491 | 5.8E-8 | IPR000719 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 25 | 128 | 14.325398 | IPR002902 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 162 | 526 | 24.075161 | IPR000719 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 134 | 237 | 13.610282 | IPR002902 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 363 | 375 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19090.1 | receptor-like serine/threonine kinase 2. receptor-like serine/threonine kinase (RKF2) | 0 |
| RefSeq | XP_013696182.3 | cysteine-rich receptor-like protein kinase 1 [Brassica napus] | 0 |
| Q9LMB9 | Cysteine-rich receptor-like protein kinase 1 OS=Arabidopsis thaliana OX=3702 GN=CRK1 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8X7V5T6 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_031923 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G19090.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10007076m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g17010.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB04g033650.2N |