Basic Information
Locus ID:
BniB04g033570.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Zinc ion binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B4 | 17835827 | 17841025 | - | BniB04g033570.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.89 | 143,004.69 Da | 53.43 | 84.47 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16464 | RING-H2_Pirh2 | 1131 | 1174 | 5.60193E-22 | - |
| CDD | cd12108 | Hr-like | 593 | 735 | 3.80441E-22 | - |
| CDD | cd12108 | Hr-like | 47 | 176 | 7.7082E-26 | - |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 51 | 178 | 1.6E-9 | IPR012312 |
| Pfam | PF05495 | CHY zinc finger | 1004 | 1078 | 5.8E-18 | IPR008913 |
| Pfam | PF13639 | Ring finger domain | 1130 | 1173 | 7.6E-8 | IPR001841 |
| Pfam | PF14599 | Zinc-ribbon | 1179 | 1236 | 5.5E-26 | IPR039512 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 1069 | 1125 | 4.71E-16 | IPR037275 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 995 | 1061 | 5.62E-17 | IPR037274 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1131 | 1182 | 5.3E-8 | - |
| Gene3D | G3DSA:2.20.28.10 | - | 1202 | 1238 | 3.8E-17 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 586 | 764 | 9.9E-15 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1125 | 1176 | 1.8E-10 | IPR013083 |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 43 | 196 | 5.7E-25 | - |
| SMART | SM00184 | ring_2 | 1046 | 1076 | 20.0 | IPR001841 |
| SMART | SM00184 | ring_2 | 1132 | 1173 | 1.0E-5 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 1068 | 1131 | 29.091991 | IPR017921 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1132 | 1174 | 11.840146 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 997 | 1066 | 23.512857 | IPR008913 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 853 | 900 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 861 | 896 | - | - |
| Coils | Coil | Coil | 863 | 883 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G18910.1 | zinc ion binding;zinc ion binding. | 0 |
| RefSeq | XP_018436397.1 | PREDICTED: uncharacterized protein LOC108808794 isoform X1 [Raphanus sativus] | 0 |
| F4IDY5 | Zinc finger protein BRUTUS-like At1g18910 OS=Arabidopsis thaliana OX=3702 GN=At1g18910 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X7S8Z4 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_031914 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology